Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24k01
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 64 2e-11
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 44 3e-05
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 42 8e-05
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 41 2e-04
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 36 0.006
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 35 0.017
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 34 0.022
03_02_0646 + 10141967-10142476,10143721-10144254 32 0.090
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 31 0.21
11_04_0086 + 13362788-13362937,13363887-13363970,13364233-133642... 30 0.48
03_05_1041 - 29884975-29885107,29885485-29885552,29885652-298858... 30 0.48
09_04_0437 - 17587944-17588909 28 1.5
08_02_1016 - 23606089-23607072 28 1.5
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 28 1.5
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 28 1.9
04_04_0048 + 22351788-22352177,22353175-22353711 28 1.9
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472... 28 1.9
01_01_0282 - 2349336-2349583,2349719-2349786,2349880-2349950,235... 28 1.9
02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143... 27 2.6
07_03_1719 - 28987426-28987851,28987954-28988231,28988329-28988530 26 7.8
03_02_0681 + 10358224-10359006,10359162-10359272,10360445-10360648 26 7.8
02_05_0446 - 29091389-29091559,29091722-29091774,29091945-290923... 26 7.8
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 64.1 bits (149), Expect = 2e-11
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = +2
Query: 29 LYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 175
+Y +T+ CW I K EG +F++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 288 MYSSTLDCWRKIYKVEGIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 26 ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIK 166
+ YK+++ ++ I K EG + FKGA +N+LR GA VL YD+++
Sbjct: 323 VKYKSSMDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 169
YKN H I TEG F+G +N+L G GA VL YD++ +
Sbjct: 266 YKNAFHAAKQIVSTEGFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 26 ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 175
+ Y +++ + I EG + FKGA +N+LR GA VL YD+++ V+
Sbjct: 321 VKYNSSLDAFKQIVAKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 121
YK C+ K EG A ++G +NV+R
Sbjct: 124 YKGIADCFGRTIKDEGVIALWRGNTANVIR 153
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 11 RAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 121
R D YK+T+ C+A K +G AF+KG +N R
Sbjct: 237 RMMGDATYKSTLDCFAKTLKNDGLPAFYKGFIANFCR 273
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 34.7 bits (76), Expect = 0.017
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 11 RAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 172
R D Y +TI C+ K +G AF+KG N R G+ + + ++++K+
Sbjct: 243 RMMGDSAYTSTIDCFVKTLKNDGPLAFYKGFLPNFARLGSWNVIMFLTLEQVQKL 297
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRG-TGGAFVLVLYDEIKKV 172
Y+ + ATIA+ EG +A +KG + R G + LY+ ++ V
Sbjct: 54 YRGLLGTAATIAREEGAAALWKGIVPGLHRQCIYGGLRIGLYEPVRTV 101
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 34.3 bits (75), Expect = 0.022
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 29 LYKNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 172
+Y+N HC + TEG ++ +KG F+ R G A V+ ++++++
Sbjct: 811 VYRNGFHCGYQVVVTEGVTSLYKGGFATFARLGPQTAITFVVCEKLREL 859
>03_02_0646 + 10141967-10142476,10143721-10144254
Length = 347
Score = 32.3 bits (70), Expect = 0.090
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 2 QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGA 136
Q G + + YK IHC TI EG + GA V+R GT A
Sbjct: 179 QKGLSPDLLRYKGPIHCARTIVTEEGLFGLWAGALPTVMRNGTNQA 224
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 23 DILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEI 163
DI YK +H TI EG A +KG ++R G A + + D++
Sbjct: 286 DIKYKGMVHAIRTIYTEEGLRALWKGLLPRLMRIPPGQAIMWAVADQV 333
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKG 100
Y+ HC T+ ++EG A +KG
Sbjct: 75 YRGIAHCGTTVVRSEGVRALWKG 97
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 175
+I KTEG + F+G F NV+R A L +D KK L
Sbjct: 179 SIMKTEGWTGLFRGNFVNVIRVAPSKAIELFAFDTAKKFL 218
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFV-LVLYDEIKKVL 175
Q G +YKN H I + EG +KG + ++ A + + Y+ KK+L
Sbjct: 353 QVGAVGGRQVYKNVFHALYCIMENEGIGGLYKGLGPSCIKLMPAAGISFMCYEACKKIL 411
>11_04_0086 +
13362788-13362937,13363887-13363970,13364233-13364294,
13365146-13365507,13365928-13366142,13366236-13366292
Length = 309
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTG-GAFVLVLYDE 160
YKN H IA EG A +KGA V+R +L YD+
Sbjct: 158 YKNAFHALYRIAADEGVLALWKGAGPTVVRAMSLNMGMLASYDQ 201
>03_05_1041 -
29884975-29885107,29885485-29885552,29885652-29885816,
29886262-29886372,29886999-29887072,29887387-29887480,
29887750-29887849,29888075-29888151,29888856-29888935,
29889025-29889157
Length = 344
Score = 29.9 bits (64), Expect = 0.48
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGT 127
Y+NT H TIA++EG + G + VL T
Sbjct: 57 YRNTAHAVYTIARSEGLRGLYAGFYPAVLGST 88
>09_04_0437 - 17587944-17588909
Length = 321
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 172
Y + C ++EG A +KG V R G F +VL+ +++V
Sbjct: 268 YSGALDCLIKTVRSEGAMALYKGFVPTVTR--QGPFTIVLFVTLEQV 312
>08_02_1016 - 23606089-23607072
Length = 327
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 172
Y I C ++EG A +KG V R G F +VL+ +++V
Sbjct: 274 YSGAIDCALKTVRSEGVMALYKGFIPTVSR--QGPFTVVLFVTLEQV 318
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGT-GGAFVLVLYDEI 163
YK H I EG +KG F ++++ GA V Y+ I
Sbjct: 288 YKGMYHALKEIVAKEGFGGLYKGLFPSLVKSAPAGAVTFVAYEYI 332
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 38 NTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 175
+T + +I K EG + F+G F NV+R A L +D K L
Sbjct: 170 STAEVFQSIMKHEGWTGLFRGNFVNVIRVAPSKAIELFAFDTANKFL 216
>04_04_0048 + 22351788-22352177,22353175-22353711
Length = 308
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 26 ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVL-VLYDEIKK 169
+LY+N+ C K EG +A +KG R FV V Y+++++
Sbjct: 253 VLYRNSYDCLVKTVKHEGLTALWKGFLPTWARLGPWQFVFWVSYEKLRQ 301
>03_01_0644 -
4719954-4720022,4720445-4720912,4721009-4721312,
4722321-4722745
Length = 421
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 35 KNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 175
+N IA T+G F+KG F N+LR A YD +K L
Sbjct: 162 RNLFELIHAIATTQGLKGFWKGNFVNILRTAPFKAVNFYAYDTYRKQL 209
>01_01_0282 -
2349336-2349583,2349719-2349786,2349880-2349950,
2350022-2350123,2350309-2350449,2350540-2350716,
2352228-2352338
Length = 305
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 17 KSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIK 166
K+ YK H +TI + EG +KG + +L G A +Y+ ++
Sbjct: 144 KTTRYYKGIFHAVSTICRDEGVKGLYKGLGATLLGVGPSIAISFTVYESLR 194
>02_01_0218 +
1433310-1435620,1435672-1435951,1436461-1436524,
1436557-1436562
Length = 886
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 165 LISSYKTSTKAPPVPLRTLEKAPLKKAEVPSVLAMVA 55
L +++ ST+APP PL L ++A+ + L VA
Sbjct: 22 LSNTFSASTRAPPPPLPPLSPLLPRRADAATALTPVA 58
>07_03_1719 - 28987426-28987851,28987954-28988231,28988329-28988530
Length = 301
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 304 ITLYLTKNKLLKSFSCLIIHDL 239
+T YLT+ +SFSC++I D+
Sbjct: 35 VTHYLTRKAQDRSFSCVVIADV 56
>03_02_0681 + 10358224-10359006,10359162-10359272,10360445-10360648
Length = 365
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFV-LVLYDEIKKVL 175
Y HC T+ + EG AFF + V+ V Y+ K++L
Sbjct: 172 YTGVSHCVRTVLRDEGLGAFFASYRTTVVMNAPYTAVHFATYEAAKRML 220
>02_05_0446 -
29091389-29091559,29091722-29091774,29091945-29092373,
29093411-29094191
Length = 477
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 156 SYKTSTKAPPVPLRTLEKAPLKKAEVPSVLAMVAQQWMVFLY 31
S K ++K PP P EKA K VP AQ LY
Sbjct: 21 SQKAASKPPPAPPLPQEKAAEKPIPVPVAPVRRAQTASATLY 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,037,284
Number of Sequences: 37544
Number of extensions: 99941
Number of successful extensions: 230
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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