Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24k01
(324 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 107 4e-26
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 107 4e-26
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 1.2
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 21 3.7
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 4.9
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 20 6.5
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 20 6.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.6
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 20 8.6
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 20 8.6
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 20 8.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 8.6
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 107 bits (256), Expect = 4e-26
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = +2
Query: 2 QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 175
QSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 243 QSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300
Score = 29.5 bits (63), Expect = 0.011
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 121
YK I C+ I K +G ++++G +NV+R
Sbjct: 53 YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 107 bits (256), Expect = 4e-26
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = +2
Query: 2 QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 175
QSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 243 QSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300
Score = 29.5 bits (63), Expect = 0.011
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 32 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 121
YK I C+ I K +G ++++G +NV+R
Sbjct: 53 YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 1.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 165 LISSYKTSTKAPPVPLRTLEKAPL 94
L++++KT T+ P + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.0 bits (42), Expect = 3.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 236 GSGCDTESHRNYGNNSYVRF 177
GS D+++ N+G S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.6 bits (41), Expect = 4.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 215 SHRNYGNNSYVRFTGP 168
++ YG N+ +R+ GP
Sbjct: 418 AYNTYGRNAGLRYRGP 433
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 20.2 bits (40), Expect = 6.5
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 322 FFLNHCITLYLTKNKLLKSFSCLIIHDLRGVAATRN-HIE 206
F NH + L+ + K + C + H+ G T HI+
Sbjct: 241 FGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIK 280
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 20.2 bits (40), Expect = 6.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 9 VVPRAISCTRTPST 50
++PR ISC TP +
Sbjct: 653 LLPRPISCHTTPDS 666
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 19.8 bits (39), Expect = 8.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 186 R*IYRTFLISSYKTS 142
R I R FLIS KTS
Sbjct: 75 RYIIRMFLISQQKTS 89
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 19.8 bits (39), Expect = 8.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 186 R*IYRTFLISSYKTS 142
R I R FLIS KTS
Sbjct: 58 RYIIRMFLISQQKTS 72
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 19.8 bits (39), Expect = 8.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 188 KNCYHNFYVIPCR 226
+N YH F ++P R
Sbjct: 299 QNSYHEFQILPER 311
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 359 MPSWIKMLFLQWLPCLLRMS 378
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 81 VPSVLAMVAQQWMVFLYRIS 22
+PS + M+ QW+ L R+S
Sbjct: 359 MPSWIKMLFLQWLPCLLRMS 378
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,026
Number of Sequences: 438
Number of extensions: 1057
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7093251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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