Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24j22
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    93   4e-20
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    84   2e-17
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    82   9e-17
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   2.8  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    27   2.8  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    26   6.6  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   6.6  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    25   8.7  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   8.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.7  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.7  

>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
 Frame = +3

Query: 351 VLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEVRERCQKYMKIRPGE 530
           V+ GASGDL++KK +P ++ L+ +  LP + + +GYAR+K    +  +R  + +KI   +
Sbjct: 15  VVFGASGDLSKKKTFPALFSLFSEGRLPKDIRIVGYARSKIEHEDFLDRITQNIKIDEED 74

Query: 531 ---EEKLETFWNANNYVAGSYDGRIDYEFLNRIISNHE-KGPIANRIFYLAVPPTVFEDV 698
              +EKLE F    +Y  GSYD   D+E LN  +   E      NRIFYLA+PP VF  V
Sbjct: 75  SQAKEKLEEFKKRCSYYRGSYDKPEDFEGLNSHLCEREGDRSTHNRIFYLALPPDVFVSV 134

Query: 699 TVNIKK 716
             N+KK
Sbjct: 135 ATNLKK 140


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 46/132 (34%), Positives = 81/132 (61%), Gaps = 4/132 (3%)
 Frame = +3

Query: 345 TFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFI-GYARTKQSVSEVRERCQKYMKIR 521
           TF++ GASG+LA KK +P +++L++ NL+  ++ ++ GYAR+K  + E RE  ++ +K  
Sbjct: 3   TFMVFGASGNLANKKTFPALFHLFKRNLVDRSSFYVLGYARSKIPIGEFRESIRESVKPD 62

Query: 522 PGEEEKLETFWNANNYVAGSYDGRIDY-EFLNRIISNHEKGPI--ANRIFYLAVPPTVFE 692
              ++  + F +  +Y +G YD    Y EF   + S  +K     A RIFY+A+PP+V+ 
Sbjct: 63  TESKQVFQDFIDRVSYFSGQYDQSSSYVEFRKHLESVEKKADSSKALRIFYIALPPSVYV 122

Query: 693 DVTVNIKKCLYI 728
            V+ +I + LY+
Sbjct: 123 TVSSHIYENLYL 134


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 81.8 bits (193), Expect = 9e-17
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
 Frame = +3

Query: 345 TFVLLGASGDLARKKIYPTIWYLYRDNLLPHNTKFIGYARTKQSVSEVRERCQKYMKI-- 518
           + ++ GASGDLA K  +P ++ LY   ++P + + IGYAR+K S     +    ++ I  
Sbjct: 3   SIIVFGASGDLATKMTFPALFALYVRKIIPEDFQIIGYARSKLSQEAANKIVTAHIPIDD 62

Query: 519 RPGEEEK-LETFWNANNYVAGSYDGRIDYEFLNRIISNHEKGPIA--NRIFYLAVPPTVF 689
             G  +K L TF     YV G+YD    +E LN II+  E  P +   RIFYL +PP +F
Sbjct: 63  TVGASQKALNTFVEHYKYVPGTYDKPESFEMLNSIIAEKETAPASECTRIFYLVLPPHLF 122

Query: 690 EDVTVNIK 713
             V+  IK
Sbjct: 123 APVSELIK 130


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 354 VQMYADNQI--QFCFPCLFQYKNFYNDVGLLFWCFFIVTIKHEQV 226
           V  YAD+Q    FC   L  +K  Y+D  L  W  +++  K E V
Sbjct: 76  VVKYADDQKVDSFCNNALQNFKLCYDDETLPLWMVYVLNDKSELV 120


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 176 LSMWGKLKISFTVIHISTAVYCTIVYGL 93
           LS++G   ISF+V+ +  +V  T+V+GL
Sbjct: 65  LSLFGIFSISFSVLGMLPSVASTLVFGL 92


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 441 TKFIGYARTKQSVSEVRERCQKYMKIRPGEEEKLETFWNANNY 569
           TKF+ Y   K  +    + C +  +I    E+KL T W+A NY
Sbjct: 221 TKFLEYNNMKH-ILRAHQLCSEGYQIL--FEKKLSTVWSAPNY 260


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 358 SVRLGTWLEKKFILLSGIYIVTTFCRITPSLLVMRVLSNLF 480
           S+RL   L K+F    G++++T F   T  L ++ +  N F
Sbjct: 5   SIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAF 45


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 352 YSSVRLGTWLEKKFILLSGIYIVTTFCRITPSL 450
           +S   +  W E+K   L+GIYI++    +TP L
Sbjct: 149 FSFKAMNPWYEEK---LTGIYIISLLQSVTPKL 178


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 96  TINYSTIYCGAYMNNSKRNFQLSPHRKCNI*QNNK*FDAEFYNLLA 233
           T+ Y++IY   YMN SK  +Q+    +  + + +  F    Y LLA
Sbjct: 444 TLAYASIYSVPYMNASKALYQIEQLNRVGLRRRSYYFSK--YTLLA 487


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 338 IIKFSFVFHVCFNTRTSTMMLDYCFGVF 255
           IIK + +  +   +RT  +++DYCF +F
Sbjct: 665 IIKQATIPEISSFSRTIEILIDYCFTIF 692


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 339 DNQIQFCFPCLFQYKNFYNDVGLL 268
           D++++FCF   F+Y    N V LL
Sbjct: 204 DDEVEFCFLTWFEYTMEQNSVELL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,008
Number of Sequences: 5004
Number of extensions: 71428
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)