Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24j17
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.92 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   2.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 354 HKLQNYHHH 328
           H LQN+HHH
Sbjct: 142 HHLQNHHHH 150


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 139 RFPKICLRFIGGQMR 183
           R  K+C++ IGGQ++
Sbjct: 268 RMNKLCIQTIGGQIK 282


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 299 PYIIKDMNTRTYCT 258
           PY+I  MNT T+ T
Sbjct: 28  PYVIGLMNTMTHTT 41


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 299 PYIIKDMNTRTYCT 258
           PY+I  MNT T+ T
Sbjct: 27  PYVIGLMNTMTHTT 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,921
Number of Sequences: 438
Number of extensions: 2107
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)