Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24j16
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    29   0.14 
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    29   0.14 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   0.32 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   0.43 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   0.75 
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   0.99 
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    24   3.0  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   4.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   4.0  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    23   5.3  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    23   7.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   9.2  

>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 51  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 164
           +   L G A+Y +  T+ GR  + R     MG V +YF
Sbjct: 177 EHKSLSGTARYMSINTHLGREQSRRDDLESMGHVFMYF 214


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 51  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 164
           ++  L G A+Y +  T+ GR  + R     +G V +YF
Sbjct: 174 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYF 211


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 51  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 164
           +   L G A+Y +  T+ GR  + R     +G V +YF
Sbjct: 174 ERKSLSGTARYMSINTHLGREQSRRDDLESLGHVFMYF 211


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 0.43
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 142 ITAYVALAVFNLPLF-V*LLKYFAKPLSWDSSTEESPAILI 23
           ++A++ L   NLP + +     F + LSW SST+ +   L+
Sbjct: 288 VSAFLTLTQLNLPAYDLNFCNNFIRKLSWSSSTKSNYVSLL 328


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 48  VDESQLKGLAKYFNSQTNRGRLNTARATYAV-MGAVILYF 164
           +D+S LK    Y +   N  R+NT  A  A+  GA +L +
Sbjct: 205 LDDSNLKASCVYHDGSFNDTRMNTTLAVTAIDNGATVLNY 244


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 51  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 164
           D   L G A+Y +  T+ G   + R     +G V+LYF
Sbjct: 170 DNKNLTGTARYASINTHIGIEQSRRDDLESLGYVLLYF 207


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 62  AQRLSKILQQSDKQRKIKYGQSH 130
           A+R SK+ ++SDK+  +   +SH
Sbjct: 103 AERESKLQEESDKETPVMLNKSH 125


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 74  SKILQQSDKQRKIKYGQSHICS 139
           SK+L+ S + +K K+G+   C+
Sbjct: 106 SKVLRDSTRTKKFKFGKEFHCA 127


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 28  GWPETLLSMNPSSKA*QNTSTVRQTEED 111
           G+P  ++S +P+SK    TS   + E+D
Sbjct: 390 GFPNKIVSFSPNSKEVTITSAPDEVEQD 417


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 51  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 164
           +   L G A+Y +  T+ G   + R     +G V++YF
Sbjct: 171 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLVYF 208


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 188 MNYKQNLLACFCKGLLSYI 244
           + ++ N L+ FC GLL YI
Sbjct: 335 LTFEINDLSIFCAGLLPYI 353


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 56  FIDRRVSGHPDLKNYVI 6
           F+ R++S HP+ +NY I
Sbjct: 68  FLLRQLSSHPNGRNYAI 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,213
Number of Sequences: 5004
Number of extensions: 14820
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)