Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24j09
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 105 6e-24
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 49 7e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 48 1e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 46 7e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 9e-06
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 40 3e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.007
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 36 0.007
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.010
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 35 0.013
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.017
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.030
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.053
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 32 0.070
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 32 0.092
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.21
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 30 0.28
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 30 0.28
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 30 0.28
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.28
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.86
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.86
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 29 0.86
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 28 1.1
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.0
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 4.6
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.6
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 6.0
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 8.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 8.0
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 105 bits (252), Expect = 6e-24
Identities = 54/101 (53%), Positives = 66/101 (65%)
Frame = +3
Query: 402 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 581
+K RV EME EA KL+ MQ ++D + T L +K D +SVYVGNVDY
Sbjct: 17 MKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVGNVDY 64
Query: 582 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
T EEL+ HF CGS+NRVTILC+K+ GHPKGFAYIEF +
Sbjct: 65 SVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 48.8 bits (111), Expect = 7e-07
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 531 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
+++ + +V+VGN+ + AT ++L F GCG I + + + G KGF Y+ F D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/77 (20%), Positives = 34/77 (44%)
Frame = +3
Query: 468 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 647
D++ P P ++ + + +V+VG + + + L Q F G+I +
Sbjct: 235 DEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARV 294
Query: 648 LCNKYDGHPKGFAYIEF 698
+ + G KG+ Y++F
Sbjct: 295 IMDGQSGRSKGYGYVDF 311
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +3
Query: 489 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 668
S P T SI+ + + ++VGN+D+ T +L++HF G I RV ++ + G
Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTG 266
Query: 669 HPKGFAYIEFGD 704
KGF +++F D
Sbjct: 267 KCKGFGFVDFPD 278
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3
Query: 552 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
R V+VGN+ + A E L ++F CGSI+ V I+ + KGFAYI+F D
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.2 bits (102), Expect = 9e-06
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 426 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAEE 599
+E EK + DK S+ +PP T S +K + ++R V +VGN+ ++ E
Sbjct: 52 DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107
Query: 600 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
L+ HF G + V I +K G KG+A++EF
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
VYVGN+ + T E++ F CG I R+ + +++ P GF ++E+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +3
Query: 516 NMSIEEK---IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFA 686
N+S +E+ + ++ + +++ N+ Y ++L+ F G + +V + +K +PKGFA
Sbjct: 308 NVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
Query: 687 YIEFGD 704
YI+F D
Sbjct: 368 YIDFHD 373
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +3
Query: 489 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 668
S G+ + + ++ + + + N+ + AT ++++ G + V + K+D
Sbjct: 700 SHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDR 758
Query: 669 HPKGFAYIEF 698
+GFA+ EF
Sbjct: 759 SARGFAFAEF 768
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 564 VGNVDYGATAEELEQHFHGCGSINRVTI 647
V N YG +AEEL F G + R+ I
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
VYVGN+ Y E++ F G + ++ + G PKG+ + E+ D
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 522 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
+I + + ++VG V T EE F+ G + T++ +K G P+GF ++ +
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Score = 31.9 bits (69), Expect = 0.092
Identities = 16/90 (17%), Positives = 38/90 (42%)
Frame = +3
Query: 429 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 608
E+ E K ++ GS ++ N ++ +++G +++ T + L
Sbjct: 122 EDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 609 HFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
+F G + T++ + G +GF ++ F
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 546 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
D+ ++ V N+ EEL F G I RV + +K G KGFA++ + D
Sbjct: 200 DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 543 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
+D+ +Y+GN+D+ +++ F G + ++ +K G KGFA++++ D
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
V+VGN+ Y + +++ + F+ G + ++ + G KG+ + EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 501 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG 680
++ PL + + R +YV N+D+ +++E F G + V I +++ H KG
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI-PKRFNQH-KG 797
Query: 681 FAYI 692
F Y+
Sbjct: 798 FGYV 801
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.5 bits (73), Expect = 0.030
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +3
Query: 531 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 704
E ++A+ +VY+ N+D T +E F G I ++++ ++ D P+GF ++ + +
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYAN 310
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.053
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 519 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRV 641
+S+ + E ++ ++YVGN+D + EE+ +HF G + +
Sbjct: 6 LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 546 DNRSVYVGNVDYGATA--EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
D ++YV N+D +LE F GSI + C G KG+ ++ F
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 32.3 bits (70), Expect = 0.070
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +3
Query: 531 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
+K R VYVGN+ Y EL++ G++ IL N +G KG A IE+
Sbjct: 59 QKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEY 113
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
+YVGN+ + + L F GS+ R I + G KGF ++F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
V+V N+ T+E+L HF G + + + N Y G G I F
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISF 142
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 483 MGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKY 662
MG PP SP+ + + I NR+VY+GN+ T EE+ G G ++ + L K+
Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKH 358
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 549 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 659
+R++Y+GN D T E L++ F G I V K
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREK 449
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +3
Query: 549 NRSVYVGNVDYGATAEELEQHFHGCG----SINRVTILCNKY---DGHPKGFAYIEF 698
N++VY+ + T +E+E+ F CG +I+ T Y DG PKG A I F
Sbjct: 109 NKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVF 165
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 168 QVIQFITTNRTVFKLQSVFELHKITI*CKIFT 73
+V F T TVFK++ VF LH++ + IFT
Sbjct: 293 KVANFWCTLNTVFKIREVFTLHQLQVISLIFT 324
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +3
Query: 504 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 683
TS S +E + ++++G ++ T ++Q ++ G +V ++ N+Y G G+
Sbjct: 78 TSNYGSSRDENVY-QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136
Query: 684 AYIEF 698
++EF
Sbjct: 137 CFVEF 141
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 507 SPLNMSIEEKIE--ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 659
SPL SI+ A +R+V++GN+ +E+E+ F G I + IL K
Sbjct: 282 SPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKK 334
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 504 TSPLNMSIEEKI-EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 668
+ PL +E+ I +R+VY ++ T EELE G I + L N+ G
Sbjct: 483 SGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSG 538
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 28.7 bits (61), Expect = 0.86
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 480 SMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 659
S S +S L+ S EE + R++ V N+ T E + + F G I+ + + K
Sbjct: 79 SFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYK 134
Query: 660 YDGHPKGFAYIEF 698
KG+ YIE+
Sbjct: 135 KSELNKGYCYIEY 147
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
+ V V AT E++E F G + + + ++ G+ KG+A IE+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 423 MEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV 560
ME+ + K+ +TEV ++ S GL LN+ + ADN V
Sbjct: 65 MEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 552 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD--GHPKGFAYIEF 698
+ +YVG + + +LE F GS++ + I+ NK G + FAY+ F
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEII-NKSTPVGTIQRFAYLNF 54
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 336 YSLSR*FLPNDCCQSSLKNHHFLPFP 259
Y R ++P D + SL++ HFLPFP
Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +3
Query: 540 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGH----PKGFAYIEFGD 704
+AD+ V+VG + E+ F G++ +VTI + P G A++ F +
Sbjct: 40 QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +3
Query: 180 DFIVDLVTVSEK*SDLEIYNS*FRRSVEMAENDDFLDSI----DNNHLEGTNGSMNMTDN 347
DF + + + D+++ S +++ + + DDF + D++ LEG NG M +T
Sbjct: 398 DFSAYIASSESEDEDVDVIRSRYQKLLS-GDADDFQANSNPFEDDDKLEGANGEMEVTFT 456
Query: 348 SXXXXXXXXXXXXXXXXXIKARVREMEEEAEKLKQMQ 458
S I+ R+ E ++ K+++
Sbjct: 457 SGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELR 493
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +3
Query: 558 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
+Y+ N+ +++ + G + ++ N DG KGF + EF
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 405 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 584
K + RE ++E EKL++ Q + K+ S G +S ++ ++ A+N S G G
Sbjct: 181 KEKERE-KKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAG 239
Query: 585 A 587
+
Sbjct: 240 S 240
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 438 EKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 608
EK+K+++ E +QMS+ S L S L ++ E I + S+ + N +L+Q
Sbjct: 279 EKIKKIEDERMRQMSVSSDRTLDSQL-QTVNENITRISTSIELKNTALEEEHGDLQQ 334
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +3
Query: 414 VREMEEEAEKLKQMQTEVDKQMSMGSPP 497
++++EEE EKL+ ++ +++++S P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 519 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 698
MSI E D ++Y+GN+D T L + G + + I ++ GF + EF
Sbjct: 1 MSIREDRNQD-ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,776
Number of Sequences: 5004
Number of extensions: 49372
Number of successful extensions: 159
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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