Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24i02
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    56   4e-09
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    29   0.72 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.7  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   2.2  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.1  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
 Frame = +1

Query: 406 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 576
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 577 NGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 750
           NG W  K +L                +    +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 127 NGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 750 FSPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILN 571
           FS G  +I   N L NNV E +N +  + C+     +  +C    TN+    D P+T  N
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPET-FN 104

Query: 570 SS 565
           SS
Sbjct: 105 SS 106


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 96  ILILLNAHKNIQLQIF*ICH*TQQNSEF 13
           +L +LN H   QL++F +CH    NSEF
Sbjct: 711 LLTILNLHDRSQLKLFEVCH----NSEF 734


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 284 ELVQDGHAEQHSE---QAVLPQQHASCAAEQRPNTAPISSF 171
           +L+ D  A QH     Q  +P   AS +    P  AP+SSF
Sbjct: 174 KLLPDQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSSF 214


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 LGHQIFIGYWWHYRSILHPRRSICFDMDGV 674
           L HQ F  +W+  R +++P R +C+ +  V
Sbjct: 544 LYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 42  KSKKSATEYFYVRLIISKYRYLLLGM*IVVHKTDNTINTK*ELKTRNGCS 191
           K  K+ TE  Y+R +IS+   + L M +++HK    I+   E   RN  S
Sbjct: 404 KLYKTTTE-MYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLS 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,316
Number of Sequences: 5004
Number of extensions: 69789
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)