Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24i02
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...   134   6e-32
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...   124   7e-29
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    54   8e-08
AC006720-3|AAF60447.1|  159|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical ...    29   3.6  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    28   6.3  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    28   6.3  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    28   6.3  

>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score =  134 bits (324), Expect = 6e-32
 Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
 Frame = +1

Query: 280 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCD 456
           +ST++R+MYA +L   T + CI L PG+ N+L +   FC    +            + C 
Sbjct: 35  SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85

Query: 457 EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXX 636
            A G+ AVYR+  AT  F+LL  LIMIGVK SKD R+ IQNGFW  KYL++         
Sbjct: 86  HATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDGRSSIQNGFWFFKYLILGALIVGFFF 145

Query: 637 XXXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWVS 762
                 A+  M  G+IGGF +I+IQLILI+DFAH  AE WV+
Sbjct: 146 IRSESLATPLMYIGLIGGFMFILIQLILIVDFAHGLAEAWVT 187


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score =  124 bits (299), Expect = 7e-29
 Identities = 65/157 (41%), Positives = 89/157 (56%)
 Frame = +1

Query: 280 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 459
           NST++R+MYALML+  T +  + L PG+  +L +  +  +  +            V+C+ 
Sbjct: 35  NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYAG--------VNCEH 86

Query: 460 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXX 639
           A+GY AVYR+      FF L  L+M GV SSKD R+ IQNGFW  KYLL+          
Sbjct: 87  AIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFGIIGGFFFI 146

Query: 640 XXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 750
                A+  M  GM+G F +I+IQLILI+DFAH  AE
Sbjct: 147 GSETLATPLMYIGMLGAFLFILIQLILIVDFAHGLAE 183


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +1

Query: 280 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 456
           +ST++R+MYA +L   T + CI L PG+ N+L +   FC    +            + C 
Sbjct: 35  SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85

Query: 457 EAVGYLAVYRITFATCLFFLLMALIM 534
            A G+ AVYR+  AT  F+LL  LI+
Sbjct: 86  HATGFQAVYRVCAATASFYLLFILIV 111



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 715 ILIIDFAHSWAEIWVS 762
           ILI+DFAH  AE WV+
Sbjct: 108 ILIVDFAHGLAEAWVT 123


>AC006720-3|AAF60447.1|  159|Caenorhabditis elegans Hypothetical
           protein Y17G9B.6 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 238 CCHSNTPAVLQNKGPTLHPFLVFNSHF 158
           C HSNTP+++      L PFL   SHF
Sbjct: 84  CYHSNTPSLVSLFFSHLQPFLAIFSHF 110


>AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical
           protein Y59E1A.1 protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 GHAEQHSEQAVLPQQHASCAAEQRPNTAPISSF*LSLCVDCVVCFMYY 126
           G+  +++ +A +PQ  A C A+++ +    SS  +     C+ CF YY
Sbjct: 419 GYITENTSKASMPQSVAGCLAKEKDD----SSTPMCALFFCLFCFTYY 462


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 341
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 341
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 211 LQNKGPTLHPFLVFNSHFVLIVLSVLCTTIYIPSNKYLYFDII 83
           ++ KG TL PFL     ++++ +  LC      +   + F +I
Sbjct: 1   MKEKGSTLVPFLADRQRYIILAIGTLCIAAIASNMTVINFTMI 43


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 341
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,369
Number of Sequences: 27780
Number of extensions: 395759
Number of successful extensions: 1094
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)