Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24h18
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   2.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   5.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   7.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         20   7.4  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 272 CTILHKLIVDDFHACWLTIPSSLWNSFLEV 183
           CT + K  +D     + T     WN F+E+
Sbjct: 78  CTEIQKQNLDKLAEWFTTNEPEKWNHFVEI 107


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 272 CTILHKLIVDDFHACWLTIPSSLWNSFLEV 183
           CT + K  +D     + T     WN F+E+
Sbjct: 78  CTEIQKQNLDKLAEWFTTNEPEKWNHFVEI 107


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 218 IPSSLWNSFLEVCRS 174
           I  SL   FL+VCRS
Sbjct: 334 IRESLDTQFLQVCRS 348


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 293 FLNSVIYC 270
           FLN+++YC
Sbjct: 153 FLNTIVYC 160


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -2

Query: 144 EIRHVSTPLLEIL-ALVTCE-----APWLRCLSSLCKLNQLASKRSFCYC 13
           E+   + PLL +    VTC+     + WL    S C +  LA +R    C
Sbjct: 46  ELMDSNEPLLPLRHRRVTCDVLSWQSKWLSINHSACAIRCLAQRRKGGSC 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,770
Number of Sequences: 438
Number of extensions: 1336
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)