Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24h10
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 394 NCNTAFRSTWKIMHSDRSVHDNSR 465
           N    +R TWK    DR+  + SR
Sbjct: 54  NSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 394 NCNTAFRSTWKIMHSDRSVHDNSR 465
           N    +R TWK    DR+  + SR
Sbjct: 54  NSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 394 NCNTAFRSTWKIMHSDRSVHDNSR 465
           N    +R TWK    DR+  + SR
Sbjct: 54  NSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 394 NCNTAFRSTWKIMHSDRSVHDNSR 465
           N    +R TWK    DR+  + SR
Sbjct: 54  NSYRKYRETWKERSRDRTERERSR 77


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 147 IITIPGKRPELLFTPLLVPNDFSSVIFSK*QLDP 46
           +I+ PG+    L    ++P   SS+I    QLDP
Sbjct: 95  LISFPGELLMRLLKMFILPLIVSSLISGMAQLDP 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 107 VNKSSGRFPGIVIIIILAEFCERFSYS 187
           +N+     PGI I + + + C R +Y+
Sbjct: 5   INRDEDILPGITIGVHILDTCGRDTYA 31


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 107 VNKSSGRFPGIVIIIILAEFCERFSYS 187
           +N+     PGI I + + + C R +Y+
Sbjct: 95  INRDEDILPGITIGVHILDTCGRDTYA 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,599
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)