Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24g01
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   4.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   4.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   7.3  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 161 CG*DDSCEGQTNKSARFKHYDVC 93
           CG  +   G  N+  RFKH D C
Sbjct: 37  CGHGNKSSGP-NELGRFKHTDAC 58


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 161 CG*DDSCEGQTNKSARFKHYDVC 93
           CG  +   G  N+  RFKH D C
Sbjct: 42  CGHGNKSSGP-NELGRFKHTDAC 63


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 161 CG*DDSCEGQTNKSARFKHYDVC 93
           CG  +   G  N+  RFKH D C
Sbjct: 42  CGHGNKSSGP-NELGRFKHTDAC 63


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 114 TSAFVCLALAAVVSATNVRQCPGKSVPELS--KAVQLH 221
           TSA V L +  V++ T +      S+P +S  KA+ ++
Sbjct: 270 TSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIY 307


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 697 NRLLIINQFINQLFKHIILILNK 629
           N  ++  QF+NQL K  +L+  K
Sbjct: 417 NNEIVTAQFLNQLKKSSVLVHTK 439


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 662 LIDELIDDQKSVFIFDLVP 718
           L+   +D Q+S+  FDL+P
Sbjct: 24  LLGRTVDAQRSLEFFDLLP 42


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 391 YIQKMIRNQDVRSKRGP 441
           YI++ +  +D RS RGP
Sbjct: 32  YIRQAVAMRDPRSNRGP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,226
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)