Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f24
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   1.0  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   3.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    24   4.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    24   4.0  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    24   5.3  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    23   7.1  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    23   9.3  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     23   9.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   9.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    23   9.3  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 NSDILQMV*NKKTKNYFGINMVQN 269
           +S    +V  K+ KNY G+N+VQN
Sbjct: 307 SSSHFSVVAMKRRKNYLGLNVVQN 330


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 170 NISATSFYSQFGYTTNGIKQKN*ELFWHQYGAE*MIKRKKK 292
           N+ +T F S   + + G+  K+  +F+H      ++K +KK
Sbjct: 39  NLLSTLFCSSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKK 79


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 62  YRPWRLLLTLFQYWTTS 112
           Y+ WR+LL  F YW ++
Sbjct: 49  YQYWRILLWQFIYWNST 65


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 272 FILHHIDAKIILSFFVLYHL*YIRIVNKNLLLI 174
           FIL +  + I +S ++LY +    I N N L+I
Sbjct: 195 FILLNASSAISMSLYLLYRVSSFSISNPNALMI 227


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 155 ENHVDNISATSFYSQFGY 208
           E  VDN +A SFY + G+
Sbjct: 109 ETEVDNEAAMSFYERLGF 126


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 155 ENHVDNISATSFYSQFGYTTNGIKQKN*ELFWH 253
           E H +N+S   F+S+F    +G +    ++ WH
Sbjct: 225 EGHTNNVSFAFFHSKFPIIISGSEDGTVKI-WH 256


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 67   PIPTLGPKILSYF 29
            P+PTL P+IL  F
Sbjct: 1516 PVPTLSPEILELF 1528


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 166 RQHISNKFLFTIRIYYKWYKTKKLRIILA---SIWCRIND 276
           +Q+  +   F    + +W   +K +IILA   S W  +N+
Sbjct: 124 KQNFPHNIEFETADFLRWESKRKFKIILALSVSKWVHLNN 163


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 292 FFFAFYHLFCTILMPK*FLVFLFY 221
           F+   Y+L+  +++ + FL+FL Y
Sbjct: 432 FWIRIYYLYLKLMIFRPFLIFLAY 455


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 123 GGNGEVVQYWNSVSS 79
           GGN  VVQ W++ SS
Sbjct: 322 GGNDNVVQIWDARSS 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,688
Number of Sequences: 5004
Number of extensions: 20637
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)