Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f24
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0586 + 15782645-15782721,15782781-15783405                       29   0.86 
11_03_0186 + 11332864-11333697                                         28   1.1  
04_03_0273 - 13742351-13743357,13743617-13743731                       28   1.5  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           27   2.6  
03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147...    27   3.5  
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    27   3.5  
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528     26   6.1  
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302...    26   6.1  
06_01_0575 + 4062084-4063135,4063518-4063620                           25   8.0  

>05_03_0586 + 15782645-15782721,15782781-15783405
          Length = 233

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +3

Query: 48  GPSVGIGPGGCCLRCSSTGRPHHYRL*VHSRGVVTAKTTST 170
           G   G  P GCC    S G P   RL   SRGV   K   T
Sbjct: 167 GQRRGFLPTGCCSLLLSIGAPSLLRLAYSSRGVPHVKERDT 207


>11_03_0186 + 11332864-11333697
          Length = 277

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 60  GIGPGGCCLRCSSTGRPHHYRL*VHSRGVVTAKTTST 170
           G  P GCC    S G P   RL   SRGV   K   T
Sbjct: 153 GFLPTGCCSLLPSIGDPTPLRLAYFSRGVPHVKERDT 189


>04_03_0273 - 13742351-13743357,13743617-13743731
          Length = 373

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 36  ESIFGPSVGIGPGGCCLRCSSTGRPHHYRL*VHSRGVV 149
           +++FG + G    GCC   SSTG    ++L   S+ V+
Sbjct: 191 QAVFGDAAGAAVVGCCRHPSSTGERPVFQLVRASQDVI 228


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 138 GYGPRGGNGEVVQYWNSVSSSRQG 67
           GYGP+GG+G    Y  S S S +G
Sbjct: 448 GYGPQGGSGFSESYGYSGSPSHRG 471


>03_04_0067 -
           17013606-17013614,17013912-17013998,17014126-17014746,
           17015037-17015174,17015891-17016013,17016127-17016204
          Length = 351

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 293 FFFCVLSFILHHIDAKIIL 237
           FFFC  +F+LH  D++I+L
Sbjct: 225 FFFCRSTFLLHARDSQILL 243


>03_01_0319 -
           2499470-2499598,2499681-2499746,2499830-2499937,
           2500125-2500259,2500763-2500840,2500994-2501044,
           2501805-2501879,2501975-2502037,2503048-2503137,
           2503215-2503406,2503498-2503591,2503776-2504279,
           2504415-2504614,2504712-2504756,2505023-2505082,
           2505476-2505520,2505858-2505941,2506121-2506318,
           2506960-2507667
          Length = 974

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 100 VLEQRKQQPPGPIPTLGPKIL 38
           +++ RK Q  GPIPT+ P+IL
Sbjct: 284 IVDLRKIQYHGPIPTMEPQIL 304


>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
          Length = 453

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 156 SRLQRRGYGPRGGNG 112
           SR +RR YG RGG G
Sbjct: 373 SRYRRRSYGTRGGGG 387


>09_02_0018 +
           3016137-3016186,3016529-3016776,3018717-3018811,
           3020025-3020330,3021288-3021336,3021436-3021637,
           3023364-3023532,3023605-3023634,3023742-3023807,
           3025313-3025378,3029404-3029464,3029592-3029719,
           3030716-3030757,3031074-3031190,3031280-3031339
          Length = 562

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 209 YIRIVNKNLLLICCRRGFRGYNAAAMDLEAVMVRS 105
           Y+RIVN  L L+C  +G R  +    ++E +++R+
Sbjct: 24  YLRIVNNRLQLLC--QGTRTVDEYYKEMELLLIRA 56


>06_01_0575 + 4062084-4063135,4063518-4063620
          Length = 384

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 180 ADMLSTWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQG 67
           A ML+   S   R+ +   GG G   + W S  S R+G
Sbjct: 251 AGMLALRQSSFNRKHHHHGGGGGAAAESWCSSDSDRRG 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,489,363
Number of Sequences: 37544
Number of extensions: 135861
Number of successful extensions: 438
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)