Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f24
         (293 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate rece...    28   6.2  
L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.          28   6.2  
BC047760-1|AAH47760.1|  364|Homo sapiens Y box binding protein 2...    27   8.2  
BC033800-1|AAH33800.1|  364|Homo sapiens Y box binding protein 2...    27   8.2  
AF096834-1|AAD30662.1|  364|Homo sapiens germ cell specific Y-bo...    27   8.2  
AB208818-1|BAD92055.1|  268|Homo sapiens germ cell specific Y-bo...    27   8.2  

>U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate receptor
            2C subunit precursor protein.
          Length = 1236

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 109  GRPVLEQRKQQPPGPIPTLGPKI 41
            GR  L +R  QPPG  PT GP +
Sbjct: 966  GRAALVRRAPQPPGRPPTPGPPL 988


>L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.
          Length = 1233

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 109  GRPVLEQRKQQPPGPIPTLGPKI 41
            GR  L +R  QPPG  PT GP +
Sbjct: 966  GRAALVRRAPQPPGRPPTPGPPL 988


>BC047760-1|AAH47760.1|  364|Homo sapiens Y box binding protein 2
           protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 106 RPVLEQRKQQPPGPIPTLGPK 44
           RP  ++R+QQ PGP    GP+
Sbjct: 322 RPYFQRRRQQAPGPQQAPGPR 342


>BC033800-1|AAH33800.1|  364|Homo sapiens Y box binding protein 2
           protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 106 RPVLEQRKQQPPGPIPTLGPK 44
           RP  ++R+QQ PGP    GP+
Sbjct: 322 RPYFQRRRQQAPGPQQAPGPR 342


>AF096834-1|AAD30662.1|  364|Homo sapiens germ cell specific Y-box
           binding protein protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 106 RPVLEQRKQQPPGPIPTLGPK 44
           RP  ++R+QQ PGP    GP+
Sbjct: 322 RPYFQRRRQQAPGPQQAPGPR 342


>AB208818-1|BAD92055.1|  268|Homo sapiens germ cell specific Y-box
           binding protein variant protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 106 RPVLEQRKQQPPGPIPTLGPK 44
           RP  ++R+QQ PGP    GP+
Sbjct: 226 RPYFQRRRQQAPGPQQAPGPR 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,791,867
Number of Sequences: 237096
Number of extensions: 771645
Number of successful extensions: 2049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2049
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)