Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24f24
(293 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine r... 28 1.3
Z81116-7|CAB03306.1| 669|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical pr... 26 4.1
U80455-8|AAB37886.1| 337|Caenorhabditis elegans Hypothetical pr... 26 5.4
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 26 5.4
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 26 5.4
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 25 7.1
X66104-1|CAA46899.1| 557|Caenorhabditis elegans esterase protein. 25 9.4
AF016437-2|AAB65887.1| 554|Caenorhabditis elegans Hypothetical ... 25 9.4
AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical ... 25 9.4
>AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine
receptor, class z protein28 protein.
Length = 321
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -1
Query: 293 FFFCVLSFILHHIDAKIILSFFVLYHL*YIRIVNKNLLLICCRRGFRGY 147
+ F +L LH +D L F V+ + I ++N ++C +R + +
Sbjct: 238 YIFILLFQFLHDLDVGYALFFMVVLDMIAIPLINSISYIVCNKRNVKAF 286
>Z81116-7|CAB03306.1| 669|Caenorhabditis elegans Hypothetical
protein T06C12.8 protein.
Length = 669
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 100 VLEQRKQQPPGPIPTLGPKILSYFFGFNF 14
++E+ K P P T KI SYFF F F
Sbjct: 239 MVEENKAAKPKPTSTTISKIFSYFFLFCF 267
>Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical
protein T05C12.5 protein.
Length = 168
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 93 SSTGRPHHYRL*VHSRGVVTAKTTSTTYQQQVFIHNSDILQMV*NKKTK 239
S T R HY + V TTS+ ++Q+ N+ +L+ + KK K
Sbjct: 4 SDTERHQHYTISVCPVLQTDTSTTSSVAKRQIESKNAQLLRQLIEKKNK 52
>U80455-8|AAB37886.1| 337|Caenorhabditis elegans Hypothetical
protein T01D1.5 protein.
Length = 337
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 184 KFLFTIRIYYKWYKTKKLRIILASIWCRI 270
KF++ + I Y+ KK R+IL ++ C+I
Sbjct: 212 KFVYLMPIIQSEYRIKKERVILWTLICQI 240
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 132 GPRGGNGEVVQYWNSVSSSRQGRYQH*DQKYSHISL 25
G + NG+VV+Y R+ +Y+ ++KY + +
Sbjct: 404 GSKNANGDVVKYETYKMEKRKIKYEGGNKKYEQVHI 439
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 132 GPRGGNGEVVQYWNSVSSSRQGRYQH*DQKYSHISL 25
G + NG+VV+Y R+ +Y+ ++KY + +
Sbjct: 404 GSKNANGDVVKYETYKMEKRKIKYEGGNKKYEQVHI 439
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 190 LFT-IRIYYKWYKTKKLRIILASIWCRIN 273
+FT + I Y YK +K+R L W R+N
Sbjct: 1318 MFTELAILYSKYKPEKMREHLELFWSRVN 1346
>X66104-1|CAA46899.1| 557|Caenorhabditis elegans esterase protein.
Length = 557
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 204 PNCE*KLVADMLSTWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQGRY 61
P E + V + +T FS + YG G G + W S +R R+
Sbjct: 464 PTEEDRKVMETTTTLFSNFAK--YGNPNGKGATAEIWEKYSLNRPERH 509
>AF016437-2|AAB65887.1| 554|Caenorhabditis elegans Hypothetical
protein F13H6.3 protein.
Length = 554
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 204 PNCE*KLVADMLSTWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQGRY 61
P E + V + +T FS + YG G G + W S +R R+
Sbjct: 464 PTEEDRKVMETTTTLFSNFAK--YGNPNGKGATAEIWEKYSLNRPERH 509
>AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical
protein Y41D4A.5 protein.
Length = 456
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 100 VLEQRKQQPPGPIPTLGPKI 41
+ EQ+ + PP P+PT P +
Sbjct: 18 IQEQKPKSPPPPLPTSNPVV 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,595,935
Number of Sequences: 27780
Number of extensions: 122919
Number of successful extensions: 337
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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