Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f23
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.63 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 515 NLGASCKIHSSP 480
           NLG++C+IH SP
Sbjct: 437 NLGSACRIHGSP 448


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 575 SHCPTNPRLSPGLSPISP*ANLGASCKIHSSPL 477
           S   +   LSP  S ++  A  G SC IH  PL
Sbjct: 411 SRAASKEDLSP--SSLADGARFGGSCLIHGPPL 441


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 575 SHCPTNPRLSPGLSPISP*ANLGASCKIHSSPL 477
           S   +   LSP  S ++  A  G SC IH  PL
Sbjct: 411 SRAASKEDLSP--SSLADGARFGGSCLIHGPPL 441


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 75  YFRFLETFKDE*RKQSFDGQV*KQLFRRLSGCGC*GDRGSETCRSCRSREGKIP 236
           Y   L  + D  R++   G V  +L   L+     G++ SE C S + +  K+P
Sbjct: 504 YLEALRAYVDN-RRRPNPGTVFARLLSVLTELRTLGNQNSEMCFSLKFKNKKLP 556


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -3

Query: 643 HAALIWLQAMCLVQ**VLYTWVHHTVRLIQGSHLV*VPFLHRQILEQVAK-YIP 485
           + +L+WL A C+    +L     HT      SH V       QI   +   YIP
Sbjct: 161 YVSLVWLGAACISLPPLLIMGNEHTYSETGPSHCVVCQNFFYQIYATLGSFYIP 214


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 286 AELRTQEHLAIRHSLLLGIFP 224
           A  R ++HL I  S+L  IFP
Sbjct: 193 AMTREEKHLPIGASVLFEIFP 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,135
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)