Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f18
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    29   0.43 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.00 
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.3  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   5.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.3  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 206 DPVLM*VPSVMFIHMLSKYNFRAIISTIHKYKIITKRNIKKLYILK 343
           D VL  +PS+M+I M S    +A+  TI K  ++ + + KKL  L+
Sbjct: 858 DEVLSVIPSLMYISMSS---IKALYRTISKLPVVNEESKKKLQRLQ 900


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 528 IFACQGIVKIAIVHNHKNYATNFFFATVELLKQNSTFNKM--SFTNFKLTRNLKL 370
           + A QG  KI  +H H  +  NF FA +   ++ S+  K+  S T+F  +R+ K+
Sbjct: 23  LIATQG-AKIRQIHTHNTFFKNFSFAKLGRNQRTSSLIKIHNSSTSFPKSRSEKV 76


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 534 ENIFACQGIVKIAIVHNHKNYATNFFFATVEL 439
           EN F   G+    I  NHK  A  FF  T++L
Sbjct: 48  ENSFVIMGVADPQIEGNHKIEANGFFKGTLDL 79


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  FNCKRQINNKAALHNSPTAFSFNNAYKL 100
           F+  R +    ++  +P A S NN+YKL
Sbjct: 432 FSKSRYVEGSGSMSTTPLATSVNNSYKL 459


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 555  LFFLYNVENIFACQGIVK-IAIVHNHKNYATNFFFATVELLKQNSTFN 415
            L FL  +  I   + +++ + +  NH+ +      +T+   +Q S FN
Sbjct: 907  LVFLPGISEILRVKSLIEDMPMFRNHRKFCIYMLHSTLSSAQQQSVFN 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,133
Number of Sequences: 5004
Number of extensions: 47524
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)