Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f18
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948...    29   3.1  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   5.5  

>02_05_0036 -
           25292150-25293124,25294021-25294206,25294704-25294874,
           25295135-25295353,25295461-25295712,25295802-25295903,
           25296487-25296684,25296762-25297046,25297640-25297709,
           25297797-25297970,25298825-25298952,25299059-25299163,
           25299686-25300030,25300361-25300563,25300964-25301045,
           25301667-25301744
          Length = 1190

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 416 LKVEFCFNNSTVAKKKFVA*FLWL*TIAILTIPWQAKMFSTL 541
           L VEFC+ NS  ++KK V     +   ++  +P+ +++ +TL
Sbjct: 489 LTVEFCYLNSKASRKKLVRTLFNVPRTSLELLPYYSRLVATL 530


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 11  TKFNCK--RQINNKAALHNSPTAFSFNNAYKLL 103
           +K+NC    +IN+   LH + + F FN+ Y+LL
Sbjct: 96  SKYNCHLMEKINSGHVLHRAFSVFLFNSKYELL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,434
Number of Sequences: 37544
Number of extensions: 217600
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)