Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f18
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    30   1.6  
AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    27   8.6  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  LIVKDKSIIKQLYIIHQLLFLL-IMRINYFDIFC*QYFIFFKRLHF 152
           ++V DK+ I  L  I  + F++ I++INYF I+C  Y +FF    F
Sbjct: 200 VLVVDKNYITLLGRIMNVFFVIEILQINYFVIYC-IYNLFFSSNKF 244


>AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical
           protein R52.3 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 326 KLYILKTE*RA*KKFSFRLRVSLKFVKLILLKVEFCFNNSTVAKKKF 466
           KLY  K E    KK++F+ + ++K V + L   +  FNNS + K  F
Sbjct: 50  KLYCEKEECIETKKWTFKTKFTMKLVAVDLPSSQSDFNNSFLLKHTF 96


>Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical
           protein C34B7.2 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 454 KEKICCVIFMVVNDSNFNNSLASENVFNIIE 546
           +EK+C + F V   +   NS+ S NV N++E
Sbjct: 379 EEKLCYISFDVARCNKAANSMPSINVLNVME 409


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 400 KF*TNSQSKTEFLLSTLFCFQNVQFLNVAFCYYFVFMN 287
           KF   + +   F++  +F F N  FL + +CY F+ ++
Sbjct: 193 KFLNVTMTNIFFVIGGVFLFVNCLFLVLTYCYLFIVLH 230


>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 42  IKQLYIIHQLLFLLIMRINYFDIFC*QYFIFFKRLHFYRTPSNERSKVGDCI 197
           I Q YI++   FL    +N+F +    Y IFF     +R+ ++    +G C+
Sbjct: 49  INQFYILY-FSFLRFHELNHFPLIICIYLIFFFEYITFRSMTSGLLPLGVCV 99


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 42  IKQLYIIHQLLFLLIMRINYFDIFC*QYFIFFKRLHFYRTPSNERSKVGDCI 197
           I Q YI++   FL    +N+F +    Y IFF     +R+ ++    +G C+
Sbjct: 54  INQFYILY-FSFLRFHELNHFPLIICIYLIFFFEYITFRSMTSGLLPLGVCV 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,230
Number of Sequences: 27780
Number of extensions: 259062
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)