Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f16
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    29   0.74 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    28   0.98 
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   3.0  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   4.0  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   5.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   6.9  

>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = -1

Query: 357 NHFTYFVYIYFDVNKNN*FAECGSPVFIGTGSKSDV*EMKNNIRSYKVPNGSLNLNTVRS 178
           N+F YF Y   D+NK + F +   P F     ++   +      +   P+ S  +N  RS
Sbjct: 469 NNFYYFWYGVKDLNKISKFIQSDKP-FADAIIQTQSTKPPTASSTTNNPSSS-QINQKRS 526

Query: 177 QITYILFNNNKKKTKS 130
             T  LF+ NKK  +S
Sbjct: 527 YSTSSLFSKNKKMNRS 542


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -1

Query: 273 GTGSKSDV*EMKNNIRSYKVPNGSLNLNTVRSQITYILFNNNKKKTKSGVETPRILINTT 94
           G   +SD+    +    Y   +  LN + +R++ ++  F  N+KK    V T R L+   
Sbjct: 270 GEELRSDLKLKDDTFNDYSSASMELNTSNLRARASFSNFMENEKKLYEKVNTNRTLLRNA 329

Query: 93  SWLTN 79
           +   N
Sbjct: 330 NLTLN 334


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 288 SPVFIGTGSKSDV*EMKNNIRSYKVPNGSLNLNTVRSQITYILFN---NNKKKTKSGVET 118
           SPV     S SDV   K+ I SY   +  ++ N + ++   ++F+   + +K TK  ++ 
Sbjct: 502 SPVTENPPSHSDVMGQKDTISSYYSTDTDVSANVMGNRHDEVVFSDTASGEKNTKLNIDE 561

Query: 117 PRILINTTS 91
                NT S
Sbjct: 562 STNYYNTDS 570


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 592 PEIVRLGIINVYKFQKNPIYDTIVYYSLILSMLSVSHLS 476
           PE+  L ++NV + Q+   Y  ++ Y  I  M+ +S LS
Sbjct: 14  PEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELS 52


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 141 KTKSGVETPRILINTTSWLTNNFG*P 64
           K KSG      +INT +W TN F  P
Sbjct: 206 KGKSGENKNEWIINTPNWGTNTFSTP 231


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 589  EIVRLGIINVYKFQKNP 539
            +++ LG++  +KFQKNP
Sbjct: 1226 DLIALGLLRNWKFQKNP 1242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,034
Number of Sequences: 5004
Number of extensions: 46846
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)