Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f16
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     28   7.1  
08_02_0429 + 17049775-17049813,17049885-17050547                       27   9.4  
05_02_0066 - 6284265-6284600,6284671-6284773,6285262-6285380           27   9.4  
04_03_0456 + 16096467-16096585,16096687-16096965,16097087-160971...    27   9.4  

>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 351 FTYFVYIYFDVNKNN*FAECGSPVFIGTGSKSDV*EMKNNIRSYKVPNGSLNLNTVR-SQ 175
           F Y +   FDV+++    +    VF G  + + + ++K  +  Y +PN  L  + +R  +
Sbjct: 695 FLYLITTVFDVSQDQDLVQLVDVVFPGDATFTPIGKLKEMVCIYILPNYELTAHWLRIVK 754

Query: 174 ITYILF 157
           + +++F
Sbjct: 755 LIFMMF 760


>08_02_0429 + 17049775-17049813,17049885-17050547
          Length = 233

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 544 NPIYDTIVYYSLILSMLSVSHLSYEPVILLQC 449
           NP+   I+YY  IL ++ + +     V+L +C
Sbjct: 84  NPVLGDIMYYGRILDIIELDYYGNFSVVLFKC 115


>05_02_0066 - 6284265-6284600,6284671-6284773,6285262-6285380
          Length = 185

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 544 NPIYDTIVYYSLILSMLSVSHLSYEPVILLQC 449
           NP+   I+YY  IL ++ + +     V+L +C
Sbjct: 145 NPVLGDIMYYGRILDIIELDYYGNFSVVLFKC 176


>04_03_0456 +
           16096467-16096585,16096687-16096965,16097087-16097125,
           16110110-16110773
          Length = 366

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 544 NPIYDTIVYYSLILSMLSVSHLSYEPVILLQC 449
           NP+   I+YY  IL ++ + +     V+L +C
Sbjct: 217 NPVLGDIMYYGKILDIIELDYYGNFSVVLFKC 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,751
Number of Sequences: 37544
Number of extensions: 225105
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)