Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f14
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   1.3  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   2.2  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   5.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.7  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 524  LAAYANSTNSSSFLQTADYLFP--HGCLSYISWYCVICCNLSTLCFSLKSGEI 372
            L  Y     +   +Q  D++    H CL  + W   I  +L + CFSLK+ EI
Sbjct: 965  LFPYLEPQEAELVIQIFDFISSDTHKCLQGLKW--AIPTSLDSACFSLKAKEI 1015


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 464 FPHGCLSYISWYCVICCNLSTLCFSLKSGEITGQVLR 354
           FP   + Y+  YC  C NL T   S+  G++  Q+ R
Sbjct: 589 FPESLIPYLPVYCDACLNLGTHSESI--GDLEHQIRR 623


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 485 LQTADYLFPHGCLSYISW 432
           L+ ADY++PHG  + + W
Sbjct: 172 LKQADYIYPHGLTTPMHW 189


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 97  NYEE---LQQIENTNPHYQNIVRRIN 165
           NYEE      I++TNP Y N + R+N
Sbjct: 332 NYEEHVDYDIIQSTNPAYHNAIVRVN 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,563
Number of Sequences: 5004
Number of extensions: 47547
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)