Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f14
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496           29   3.9  
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    28   6.9  
04_03_0047 + 10118929-10119276                                         28   6.9  

>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
          Length = 589

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 500 NSSSFLQTADYLFPHGCLSYISWYCVICCNLSTLCFSLKSGEITGQV 360
           N+ +FL         GCL  + W+  + C    LC +L +   + QV
Sbjct: 360 NAVAFLGPLMRAAERGCLQVVEWFVNLGCRDMELCLALTAATSSSQV 406


>06_01_0844 -
           6411121-6411129,6411671-6411796,6411980-6412043,
           6412568-6412695,6412855-6412971,6414936-6415475,
           6415554-6417344,6418359-6421407,6421765-6421823,
           6422738-6422791
          Length = 1978

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 407 STLCFSLKSGEITGQVLRC*QPNLLTNMRPTVAGATSS 294
           S++C  + SGE T Q+L+   P   T +R   AGA  S
Sbjct: 258 SSVCSKVLSGETTKQLLKLLGPGNETYIRAEAAGALKS 295


>04_03_0047 + 10118929-10119276
          Length = 115

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 517 HMLIPPTVHPSCRLPTI-YSPMVV*VIYPG 431
           H  +P  +HPS R+P +  SP++V V+  G
Sbjct: 78  HQPLPSAIHPSYRMPPLPTSPLLVTVVATG 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,095
Number of Sequences: 37544
Number of extensions: 254634
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)