Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f14
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81575-8|CAB04634.1|  433|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    28   4.7  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    28   4.7  

>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -3

Query: 398 CFSLKSGEITGQVLRC*QPNLLTNMRPTVAGATSSSITISRSHLHLGRRG*LQNRRFLMQ 219
           CFSL+ G+   + LR  + N+   +R        SS     SH H+ RR  +QN  FL  
Sbjct: 392 CFSLR-GQSISRYLR--RYNI--ELRTPDDYKRDSSKPSKPSH-HVARRNVVQNSSFLFD 445

Query: 218 CCRMFGIVPILIH 180
              +F ++P  +H
Sbjct: 446 LISLFNVIPPSLH 458


>Z81575-8|CAB04634.1|  433|Caenorhabditis elegans Hypothetical
           protein R08H2.9 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 163 NCQLGKCISIGTIPNILQH 219
           +C+L KC+ +G  PN +QH
Sbjct: 140 SCRLQKCLKVGMDPNAVQH 158


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 500 NSSSFLQTADYLFPHGCLSYISWYCVICCNLSTLCFSLKS 381
           ++SS+L   +Y+  +G +    +YC++  + S +CF+L S
Sbjct: 288 SASSYL---NYVIGYGSVFISFFYCIVATSHSVICFALSS 324


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 341 WVVSTST-PDLLFHHFSMKSRVYSNYNKLHSTRIY 442
           W++ + T PDLL H+F+++ R+   Y +    R++
Sbjct: 502 WILWSRTHPDLLVHNFTLRERLEKVYRRACQLRLW 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,250
Number of Sequences: 27780
Number of extensions: 262256
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)