Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f09
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   297   4e-81
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    31   1.1  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    27   9.9  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    27   9.9  
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    27   9.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  297 bits (730), Expect = 4e-81
 Identities = 143/176 (81%), Positives = 155/176 (88%)
 Frame = +3

Query: 177 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 356
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 357 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 536
           QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170

Query: 537 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 704
           G PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGST 226


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 382 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 206
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 205 VTGT 194
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 382 RVRCPARVCFCTGMILRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 206
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 205 VTGT 194
            + T
Sbjct: 582 QSNT 585


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 573 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 704
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 573 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 704
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 665 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 561
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 398 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 312
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 398 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 312
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 347 RHDLKNLIIQGRAEEEINDLEFFD-W*RKQVNALEFVDFSFANKTAEFGDRN-PLFLVF 177
           +H+ K L++  +      D + FD     +  ALEF++  F    A FGDRN P   VF
Sbjct: 220 KHERKGLVVTFQNFLRFLDGKQFDELASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278


>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 16  DCLS-EPIVQQWRTLLQPVDVA 78
           +CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 438 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 566
           +CS E  T   G     ++       GY+G+ +G  HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 16  DCLS-EPIVQQWRTLLQPVDVA 78
           +CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,422,817
Number of Sequences: 27780
Number of extensions: 357670
Number of successful extensions: 1059
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)