Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24f07
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 191 7e-50
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 148 9e-37
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 102 6e-23
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 42 1e-04
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 30 0.28
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 27 2.6
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.5
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 4.6
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 26 6.1
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 26 6.1
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 191 bits (466), Expect = 7e-50
Identities = 85/147 (57%), Positives = 116/147 (78%)
Frame = +3
Query: 135 MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKR 314
++F LL SRQGK+RL KW+ K + KI R++ + V+ RKPKMC+F+E+K K+VY+R
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62
Query: 315 YASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 494
YASL+F C +EQ+DNEL+ LE+IH++VE LDKYFG+VCELD+IFNFEKAY++++EL+L G
Sbjct: 63 YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122
Query: 495 ELQETSKKNVLKAIAAQDLLQEEETPQ 575
ELQE+SK NVL A+ A D E + Q
Sbjct: 123 ELQESSKTNVLSAVLAGDAESEADAQQ 149
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 148 bits (358), Expect = 9e-37
Identities = 69/143 (48%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKM-CSFLEWKDVKVVY 308
M+QF+L+ +R GK RL K+YV D K ++ + + R K +FLEW++ K+VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 309 KRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVL 488
+RYA LYFC ++ DN+L LE+IH +VE+LD +FG+VCELD+IFNF K ILDE++L
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120
Query: 489 GGELQETSKKNVLKAIAAQDLLQ 557
GGE+ E++KK+VL+ I A + L+
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 102 bits (244), Expect = 6e-23
Identities = 49/142 (34%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDV----K 299
M+ + +F+ +GK RL K+Y + +++K+ ++ V R P C+FLE + +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60
Query: 300 VVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDE 479
++Y++YA+LYF +++ ++EL L+LI +VE LD+ F +VCELD++F F++ + IL E
Sbjct: 61 IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120
Query: 480 LVLGGELQETSKKNVLKAIAAQ 545
+V GG + ET+ ++ A Q
Sbjct: 121 VVSGGLVLETNLNEIVLAAQNQ 142
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/136 (20%), Positives = 59/136 (43%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 311
M+ + +F+ +G + K + H LKK +T +L + +Y
Sbjct: 1 MISGLFIFNLKGDTLICKTF-RHD--LKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYT 57
Query: 312 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 491
++ LY + N ++ LE + ++ L YFG + E + N + +LDE++
Sbjct: 58 KHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDY 117
Query: 492 GELQETSKKNVLKAIA 539
G +Q T + ++++
Sbjct: 118 GIIQTTEPDALARSVS 133
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +3
Query: 279 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEK 458
L + + +Y + +Y + + + L + + ++ YF + E I NF
Sbjct: 50 LTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVL 109
Query: 459 AYFILDELVLGGELQETSKK 518
Y +LDE++ G Q T K
Sbjct: 110 VYELLDEIMDFGFPQTTETK 129
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +3
Query: 420 SVCELDIIFNFEKAYFILDELVLGGEL 500
++ ++++ +N E +FI +E+V GG+L
Sbjct: 217 NIIKVNMEYNSETQFFIFEEMVTGGDL 243
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 436 TSSLTLRKHTSYLMNWFLVESYKKPVRRM 522
T LT+++ S L+NW LV Y K R+
Sbjct: 562 TELLTIKQPKSSLLNWGLVNGYPKTEGRI 590
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 405 DKYFGSVCELDIIFNFEKAYFILDELV-LGGELQETSKKNVLKAIAAQDLLQEEETPQGF 581
D Y G +C + + FE +++ L+ +L+ TSK N + + ++
Sbjct: 29 DAYMG-LCN-SLTYRFEGWRHLVENLIAFFKQLESTSKNNAKEYMKLSKVIVHPYKDANV 86
Query: 582 FEDHGL 599
FE+HG+
Sbjct: 87 FEEHGI 92
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 495 ELQETSKKNVLKAIAAQDLLQE 560
+L ETSKKN+LK I ++L E
Sbjct: 114 QLVETSKKNLLKDINHDEVLME 135
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 303 VYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYF 416
++ R LYF A N +L+ R VE+ ++YF
Sbjct: 175 LFARLGDLYFVLAQSNATNYWFSLKHYCRSVEICEEYF 212
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +3
Query: 342 MEQEDNELLTL---ELIHRYVELLDKY 413
M +ED EL L E IH+Y+++ D +
Sbjct: 361 MSEEDEELWELDPVEFIHKYIDIYDDF 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,030
Number of Sequences: 5004
Number of extensions: 57372
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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