Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24f07
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 299 2e-81
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 143 1e-34
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 115 3e-26
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 47 1e-05
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 45 5e-05
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 45 6e-05
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 44 1e-04
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 44 1e-04
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 40 0.002
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 32 0.35
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 30 1.4
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70035-13|CAA93874.1| 432|Caenorhabditis elegans Hypothetical p... 29 3.3
Z47745-6|CAA87667.1| 432|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 7.6
AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical ... 28 7.6
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 7.6
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 7.6
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 299 bits (733), Expect = 2e-81
Identities = 137/157 (87%), Positives = 149/157 (94%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 311
MMQ+MLLFSRQGKLRLQKWY A+PDK KKKI RELIT +LARKPKMC+FLE+KD+KVVYK
Sbjct: 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYK 60
Query: 312 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 491
RYASLYFCCA+EQ DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE +L
Sbjct: 61 RYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLA 120
Query: 492 GELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG 602
GE+QETSKK VLKAIAAQDL+QEEETPQGFFEDHGLG
Sbjct: 121 GEIQETSKKQVLKAIAAQDLIQEEETPQGFFEDHGLG 157
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 143 bits (346), Expect = 1e-34
Identities = 63/135 (46%), Positives = 95/135 (70%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 311
M++F+L+ +R GK RL KWY+ D K+K+ E+ V R K +F+E+++ K+VY+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYR 60
Query: 312 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 491
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L
Sbjct: 61 RYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GELQETSKKNVLKAI 536
GE++ETS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 115 bits (277), Expect = 3e-26
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEW------KD 293
M++ +L+ + GK RL K+Y +P++ +++I RE V R +C+FLE D
Sbjct: 1 MIKAILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGND 60
Query: 294 VKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
+++Y+ YA+LYF ++ ++EL L+LI +VE LD+ F +VCELD+IF+ ++ + IL
Sbjct: 61 YRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHIL 120
Query: 474 DELVLGGELQETSKKNVLKAIAAQDLLQEEE 566
E+V+GG + ET+ +L+ I QD +Q++E
Sbjct: 121 GEIVMGGMVLETNMNEILQRIQEQDKIQKQE 151
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/147 (19%), Positives = 63/147 (42%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 311
M+ + +++ +G++ + + Y D + + + + AR+ +
Sbjct: 1 MIGGLFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHV 58
Query: 312 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 491
+ +++ C Q N + E + R+ + + YFG + E ++ NF Y +LDE++
Sbjct: 59 KRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDF 118
Query: 492 GELQETSKKNVLKAIAAQDLLQEEETP 572
G Q T VLK Q ++ + P
Sbjct: 119 GYPQNTD-PGVLKTFITQQGVRTADAP 144
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/138 (20%), Positives = 59/138 (42%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 311
M+ + +++ +G++ + + Y D + + + + AR+ +
Sbjct: 1 MIGGLFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHV 58
Query: 312 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 491
+ +++ C Q N + E + R+ + + YFG + E ++ NF Y +LDE++
Sbjct: 59 KRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDF 118
Query: 492 GELQETSKKNVLKAIAAQ 545
G Q T VLK Q
Sbjct: 119 GYPQNTD-PGVLKTFITQ 135
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/147 (19%), Positives = 62/147 (42%)
Frame = +3
Query: 132 MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYK 311
M+ + +++ +G++ + + Y D + + + + AR+ +
Sbjct: 1 MIGGLFVYNHKGEVLISRIY--RDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHV 58
Query: 312 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLG 491
+ +++ C Q N + + R+ + + YFG + E ++ NF Y +LDE++
Sbjct: 59 KRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDF 118
Query: 492 GELQETSKKNVLKAIAAQDLLQEEETP 572
G Q T VLK Q ++ + P
Sbjct: 119 GYPQNTD-PGVLKTFITQQGVRTADAP 144
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +3
Query: 279 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEK 458
L ++D V+ ++ ++Y A N + L +++ VE+ +YF V E + NF
Sbjct: 50 LTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVV 109
Query: 459 AYFILDELVLGGELQETSKKNVLKAIAAQD 548
Y +LDE++ G +T++ +L+ Q+
Sbjct: 110 IYELLDEMMDFG-FPQTTESRILQEYITQE 138
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +3
Query: 279 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEK 458
L ++D V+ ++ ++Y A N + L +++ VE+ +YF V E + NF
Sbjct: 50 LTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVV 109
Query: 459 AYFILDELVLGGELQETSKKNVLKAIAAQD 548
Y +LDE++ G +T++ +L+ Q+
Sbjct: 110 IYELLDEMMDFG-FPQTTESRILQEYITQE 138
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 294 VKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 473
+ Y +Y ++Y ++ N +L L +++ VE+ +YF ++ E + NF Y +
Sbjct: 55 ISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELF 114
Query: 474 DELVLGGELQETSKKNVLKAIAAQ 545
DE++ G Q T K + + I Q
Sbjct: 115 DEMLDFGYPQTTESKILQEFITQQ 138
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 32.3 bits (70), Expect = 0.35
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Frame = +1
Query: 142 LCYYLAVKAN*GFRSGTWLIQ-IS*RRK*LEN*LPQ-C*LENPKCVLSLNGKMLKLCIKD 315
+C L A R W +Q ++ ++ L L + C E +C LS K+ +LC D
Sbjct: 430 ICNNLYTPALRDLRGVAWCVQLVATKQDVLAKRLEEICDRERLRCDLSTLRKLCELCAND 489
Query: 316 MHHYISAVLWNKKTMSC*PWS*SIAM*NCWTSI-------LAVFVNWTSSLTLRKHT 465
M H I+ + W ++ + +I M I ++F +W+S L L KHT
Sbjct: 490 MRHSINTLQW--VAVAARKSNRAIGMKLIHEVIEKEKGGSASIFEHWSSILELSKHT 544
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +3
Query: 321 SLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 494
+L+ + E L+ +E +HR ++ +YF + + N + +LDE++ G
Sbjct: 63 NLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNG 120
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
F31C3.3 protein.
Length = 2029
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 483 VLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAPSVLRSG 635
+L G+L +S+K V +A+ D E ET + +ED GL A ++SG
Sbjct: 971 LLHGKLLWSSEKLVTTMLASTDPYNETETVEMLWEDFGLDWALGEIRIKSG 1021
>Z70035-13|CAA93874.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.11 protein.
Length = 432
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 396 ELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEET 569
E D YF + +L F +K Y+IL ++ L KK + K I + D + T
Sbjct: 190 EYRDAYFAFINQLRKTFEAKKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYST 247
>Z47745-6|CAA87667.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.11 protein.
Length = 432
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 396 ELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEET 569
E D YF + +L F +K Y+IL ++ L KK + K I + D + T
Sbjct: 190 EYRDAYFAFINQLRKTFEAKKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYST 247
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 471 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 617
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical
protein K01A11.5 protein.
Length = 626
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 420 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 572
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 106 SMANTEKFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 153
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 471 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 617
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical
protein Y43F4B.2 protein.
Length = 629
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 420 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 572
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 106 SMANTERFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 153
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 420 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 572
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 629 SMANTERFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 676
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 471 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 617
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,973
Number of Sequences: 27780
Number of extensions: 326735
Number of successful extensions: 881
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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