Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24f01
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    28   1.0  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    26   5.5  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.5  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 493 LYNWTLSKQKLRDCRVLCGNRVTVCLFDCDGTVRRL*SEVTPAECGSDCPSRLR 654
           LY W++ KQK  D  +L   R  + L+    T+ ++   + P+   SDC + LR
Sbjct: 505 LYGWSVYKQKALDATLLNSLRYRLTLYIMLYTLSQI--SLDPSYLTSDCKAVLR 556


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 617 GVTSLHNRLTVPSQSNRQTVTLFPHNTRQSRS 522
           G+TS  NR  + S +  +T    P+ TR++RS
Sbjct: 193 GITSTKNRYVIRSLNVDETGKTIPNITRENRS 224


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 244 WVQRMALSCSRLHGNTSCLFVLSL 173
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 486  LPALMSFSTTRTHPKA----IKQKFRMWKQIKLNHSE 388
            LP L+SFS+  T P+     I Q F  W Q K N SE
Sbjct: 1960 LPKLVSFSSASTEPRKLALDIVQTFINW-QRKQNESE 1995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,660
Number of Sequences: 5004
Number of extensions: 58299
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)