Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24f01
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 1.1
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 30 1.4
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 30 1.4
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 30 1.9
02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718 30 1.9
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 29 3.2
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 29 3.2
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 29 4.3
07_01_0975 + 8223269-8224354 28 7.5
07_01_0446 - 3371829-3372132,3374691-3375673 28 7.5
07_01_0445 - 3365244-3366227 28 7.5
06_01_0866 + 6582131-6583294 28 7.5
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 7.5
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 27 9.9
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 27 9.9
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 27 9.9
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 27 9.9
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 9.9
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 446 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 553
G + V+ + + G S Y+ P N SY+ +V CV +
Sbjct: 590 GALLVMTSILQLGQSSYLPHPIDNDSYDRIVLCVRL 625
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 574 RTDKLSLYFHTTHDSLVAFVLKGSNYIMGTARID 473
R DK S T H SLV+ ++G+NY + R+D
Sbjct: 267 RLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD 300
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 275 VRLVTAATGSMGPADGALLLSPSRKHFL 192
VR V A + S+GP D + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 446 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 553
G + ++ + + G S Y+ P N SY+ +V CV +
Sbjct: 592 GALLIMVSILQLGQSSYLPHPIDNDSYDRIVLCVRL 627
>02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718
Length = 332
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -1
Query: 648 PARAVTSALGWCNFTSQPPNGPVTIEQTNCHSISTQH 538
P VT G TS+PP P T T H I QH
Sbjct: 193 PMATVTVVSGAGGTTSRPPAAPATTTTTEQHKICLQH 229
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +1
Query: 148 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 315
PL VL GS+ R R RR PS+ P P AA + R PHT S +T
Sbjct: 38 PLPPAAVL-GSSPAARTRLRP---RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Frame = -2
Query: 287 TVREVRLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKG-SP 114
T +V + A +G+ G G L ICVEP +P G PS +G P
Sbjct: 188 TAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPSRHKIQGMGP 247
Query: 113 ASQPYTLNRN*TVAAVS-SRRNSPHTQKRVHRTENLM 6
P L+ + ++ + +++ KR+ R E L+
Sbjct: 248 GFVPKNLDISIVDEIITVTAQDAMANAKRLAREEGLL 284
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 326 SEFKVTDDG*VCGTVREVRLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 159
SE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 35 SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 263 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 102
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 83 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 187
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 59 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 154
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 288 NSARGASSHRRYRQHGSSG 232
N A+G+S HR+++ HG G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 148 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 258
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 329 GSEFKVTDDG*VCGTVREVRLVTAATGSMGPADGALLLSPSRK 201
GS F DDG C T +L ++++ + A ++ LSP ++
Sbjct: 427 GSGFMREDDGSCCSTAESAKLSSSSSSNHQDAGVSIYLSPIKE 469
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 287 TVREVRLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 111
T +V + A+ GS G G L +CVEP +P G+P +G+ A
Sbjct: 306 TAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPGPHKIQGTGA 365
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = -2
Query: 215 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHTQ 36
SPS L P +P + + S SP PA+ +T T AA +S SP T
Sbjct: 613 SPSATSSLSSSPSPAPSPDSATASRSASPTSARPATSSWTC----TSAATASA--SPATA 666
Query: 35 KRVHRTEN 12
KR T +
Sbjct: 667 KRTSSTSS 674
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 654 SKPARAVTSALGWCNFTSQPPNGPVTIEQTNCHSISTQHTTV 529
S PAR +SALG + PP + + + S++ + T+
Sbjct: 613 STPARFASSALGGTSLFRTPPGDALVFQTYSTQSVNCDYCTI 654
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 173 GSTPRCPSGTPSMSPQKGSPASQP 102
GS+PRC S M Q+ SP S P
Sbjct: 307 GSSPRCASPEKIMGSQERSPRSSP 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,425,502
Number of Sequences: 37544
Number of extensions: 418016
Number of successful extensions: 1310
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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