Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24f01
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 33 0.13
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 33 0.13
Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF003385-1|AAB54243.1| 884|Caenorhabditis elegans Hypothetical ... 28 6.7
Z93373-3|CAD54120.1| 449|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z83245-12|CAD54180.1| 449|Caenorhabditis elegans Hypothetical p... 27 8.8
U41535-14|AAB63404.1| 169|Caenorhabditis elegans Hypothetical p... 27 8.8
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 27 8.8
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 27 8.8
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 242 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 111
GPA GA +PSR + +P +T R P+ TP+ P + +P+
Sbjct: 14 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 57
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 242 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 111
GPA GA +PSR + +P +T R P+ TP+ P + +P+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 186
>Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical
protein K08C9.7 protein.
Length = 154
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 215 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLNR 87
SPS K+F E G R P+G P++S Q+ + +QP TL +
Sbjct: 107 SPSPKYFKID--ENGKISRLPTGIPTVSIQREAFMTQPTTLRK 147
>Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical
protein F44E5.2 protein.
Length = 820
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 20 CGAHVFACVVNFFG-CSRLPP 79
C H+F C + FFG CSR P
Sbjct: 555 CDRHIFRCSIPFFGFCSRCEP 575
>AF003385-1|AAB54243.1| 884|Caenorhabditis elegans Hypothetical
protein R08F11.1 protein.
Length = 884
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 547 GNRVTVCLFDCDGTVRRL*SEV 612
G++VT CLFD +GT RL S++
Sbjct: 305 GSKVTTCLFDPNGTGGRLWSDL 326
>Z93373-3|CAD54120.1| 449|Caenorhabditis elegans Hypothetical
protein ZK131.11b protein.
Length = 449
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -2
Query: 650 SRLGQSLPHSAGVTSLHNRLTVPSQSNRQTVTLFPHNTRQSRSFCF-ERVQLYNGNCP-H 477
SRLG+S P+ + + H +L++ + F +T + C E + +NGN
Sbjct: 91 SRLGESSPNLSRIHHTHTQLSLGLPNKMNQTNDFFSSTEYCQYVCSREDIDSFNGNSTGG 150
Query: 476 *CRFQPLERIRKRSNKSSECGNKLN*ITRKH 384
QP++ R ++ G L+ ++ H
Sbjct: 151 KSSEQPIQAAFLRKSRKDGGGLHLDDVSTSH 181
>Z83245-12|CAD54180.1| 449|Caenorhabditis elegans Hypothetical
protein ZK131.11b protein.
Length = 449
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -2
Query: 650 SRLGQSLPHSAGVTSLHNRLTVPSQSNRQTVTLFPHNTRQSRSFCF-ERVQLYNGNCP-H 477
SRLG+S P+ + + H +L++ + F +T + C E + +NGN
Sbjct: 91 SRLGESSPNLSRIHHTHTQLSLGLPNKMNQTNDFFSSTEYCQYVCSREDIDSFNGNSTGG 150
Query: 476 *CRFQPLERIRKRSNKSSECGNKLN*ITRKH 384
QP++ R ++ G L+ ++ H
Sbjct: 151 KSSEQPIQAAFLRKSRKDGGGLHLDDVSTSH 181
>U41535-14|AAB63404.1| 169|Caenorhabditis elegans Hypothetical
protein F18A1.8 protein.
Length = 169
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 251 GSMGPADGALLLS---PSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPAS 108
G+ P L LS P+ + FL ++ S SG+P ++PQK +P S
Sbjct: 101 GTGSPLSAGLSLSNPLPAGRGFLSPAIQNTSNQFTFSGSPRITPQKHTPVS 151
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -2
Query: 257 ATGSMGPADGALLLSPSRKHFLFICVE--PGST----PRCPSGTPSMSPQKGSPASQPY 99
A G+ GP DG S F F C PG P+ P+G P Q G+P + +
Sbjct: 140 APGTNGP-DGRPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGAPGNNGF 197
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -2
Query: 284 VREVRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQ 105
+R+++ AA GSM P+ + P H+ PG P P G P + P
Sbjct: 379 MRQMQQAAAAAGSMPPSYPSPGQYPGPMHY------PGMPPMMPPGAPFSAGASYPPMGG 432
Query: 104 PYTLN 90
P+ N
Sbjct: 433 PFPPN 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,143
Number of Sequences: 27780
Number of extensions: 360176
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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