Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e24
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   4.3  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   4.3  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    26   5.7  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   9.9  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 509 TGSARGRLHREMVPHWGHRLGKGTPIPDQTPGSDRAR*LRDRVL 640
           TGS + R++ E +      +G+G P+P+  PG   A    D  +
Sbjct: 349 TGSLKRRVYPEQITI---NIGEGVPVPEPLPGHQWAEVKHDNTV 389


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 470 IWDRMSISERRGS-TGSARGRLHREMVPHW 556
           I  ++++ E+ G  T    GRL RE+ PHW
Sbjct: 364 IMSKINVLEKEGKLTRLGCGRLVRELGPHW 393


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 648 TCGSTRSRSHRARSDPGV 595
           T G  RS  HR R DPGV
Sbjct: 238 TSGKLRSTVHRVRIDPGV 255


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 308 SSYKTNKKQNGDGHYGSGIARFNH 379
           S+Y   ++ N  GHYG G  R N+
Sbjct: 69  SNYGGRREYNRGGHYGGGEGRQNN 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,516
Number of Sequences: 5004
Number of extensions: 42186
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)