Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e24
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040...    57   1e-08
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638     31   0.63 
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280...    31   1.1  
12_02_1125 - 26327433-26328239                                         29   4.5  
03_06_0468 + 34153425-34153823                                         28   7.8  

>10_08_0180 +
           15502809-15503312,15503399-15503454,15503934-15504053,
           15504190-15504260,15504603-15504696,15504772-15504978,
           15505406-15505657,15505781-15505889,15506112-15506179,
           15506278-15506347,15506429-15506503,15506600-15506691,
           15506779-15506860
          Length = 599

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 45/83 (54%)
 Frame = +3

Query: 423 YERLLRRAKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIGKWFPIGDIDXXXXXXXXXXXX 602
           + R L +A S +LSE++ +  +Y+ GVD  GRPV+V +G  F +  +D            
Sbjct: 414 HSRYLAKANSLNLSEIAEMKIIYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEF 473

Query: 603 DPIVRGDYVIAYFHTLASSANHP 671
           +P+++  Y I YFH+ AS    P
Sbjct: 474 EPLIQKPYSIVYFHSAASLQPQP 496


>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
          Length = 272

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 444 AKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIGKWFP 551
           A  ED S++  +  +   G DR GR +V  +G++FP
Sbjct: 47  ADGEDFSDLEELQVVRVQGTDRAGRRIVRVVGRFFP 82


>03_01_0359 -
           2805094-2805175,2805256-2805347,2805443-2805517,
           2805582-2805675,2805769-2805872,2806777-2806885,
           2807397-2807609,2808170-2808289,2809060-2809115,
           2809210-2809287,2809374-2809733
          Length = 460

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
 Frame = +3

Query: 489 YQSGVDRLGRPVVVFIGKWFPIGDID------------XXXXXXXXXXXXDPIVRGDYVI 632
           Y+ GVD  GRPV+V +G  F +  +D                        +P+++  Y I
Sbjct: 277 YRGGVDSEGRPVMVVVGAHFLLRCLDLERFILYVVKLILTGLNLPSLQEFEPLIQKPYSI 336

Query: 633 AYFHTLASSANHP 671
            YFH+ AS    P
Sbjct: 337 VYFHSAASLQVRP 349


>12_02_1125 - 26327433-26328239
          Length = 268

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
 Frame = +2

Query: 434 AAACQVRRPERGIWDRMSISERRGSTGSARGRLHREMVPHW-GHRLGKGTPIPDQTPGSD 610
           + AC VR P RG W+  +          +RG   R     W G  + +  P   Q   + 
Sbjct: 74  STACPVRLPGRGGWEAAARRAAGPGCPGSRGSAVRPNGSPWRGSAVSREPPWRGQASAAG 133

Query: 611 RAR*LRDRVLPHVGLVGEP 667
           +A   R   L  VG    P
Sbjct: 134 QAGCRRSAFLGRVGCAARP 152


>03_06_0468 + 34153425-34153823
          Length = 132

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +2

Query: 470 IWDRMSISERRGSTGSARGRLHREMVPHWGHRLGKGTPIPDQTPGSDRAR*LRDRVLPHV 649
           I +++  S  R S   A  RLH +  P  GHR    TP+ +   G  R R       P  
Sbjct: 55  IREKVKNSGARSSLFDAARRLHYQCRPEHGHRACHTTPLTN-VAGGARIRPSATAAPPSA 113

Query: 650 GLVGEPS 670
             V  P+
Sbjct: 114 AAVAAPA 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,152,398
Number of Sequences: 37544
Number of extensions: 279554
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)