Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e18
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   4.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   5.3  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 211 LVSAFNTDFPSMIRLNNIIVVTVFVVYDNCRAYGECLI 98
           ++  F+T     I LN I  VT F+ + N  A G C+I
Sbjct: 173 VIETFSTRLNKKIILNTI--VTSFICWSNAIALGFCII 208


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 211 LVSAFNTDFPSMIRLNNIIVVTVFVVYDNCRAYGECLI 98
           ++  F+T     I LN I  VT F+ + N  A G C+I
Sbjct: 173 VIETFSTRLNKKIILNTI--VTSFICWSNAIALGFCII 208


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 445 FSISALGNGKSYIGGGCI 392
           F IS +GN     GGGCI
Sbjct: 644 FGISGMGNHLQIFGGGCI 661


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 134  LRQLSRLWRMFDLFNTIADDTCSKKRCSIRLAEEPISPLLPNS 6
            LRQ  R+ ++F L NT+        +  + +    + PL PNS
Sbjct: 1991 LRQDERVMQLFGLCNTLLTTDSETFKRRLNIERYTVIPLSPNS 2033


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 211 LVSAFNTDFPSMIRLNNIIVVTVFVVYDNCRAYGECLI 98
           ++  F+T     I LN I  VT F+ + N  A G C+I
Sbjct: 173 VIETFSTRLNKKIILNTI--VTSFICWSNAIALGFCII 208


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 211 LVSAFNTDFPSMIRLNNIIVVTVFVVYDNCRAYGECLI 98
           ++  F+T     I LN I  VT F+ + N  A G C+I
Sbjct: 173 VIETFSTRLNKKIILNTI--VTSFICWSNAIALGFCII 208


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 384 SDTIHPPPMYDFPFPSA-DMLKRLPHITASQTNKSIAISKLQISML 518
           S  I P P YD   P+  ++ KR+ H+   ++ K +  S  + SML
Sbjct: 176 SSNIIPTPKYDSNSPAGHELRKRMTHL-LYESYKDLGYSNAESSML 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,022
Number of Sequences: 5004
Number of extensions: 45489
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)