Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e18
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    29   2.3  
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816...    29   3.1  
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480...    28   5.4  
12_02_1073 - 25841669-25841902,25842414-25842525,25842615-258429...    27   7.1  
02_02_0339 + 9115297-9115366,9116280-9116407,9117537-9117641,911...    27   7.1  

>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 204 DTKNKVPERCSRRKSECEGCGEHSTILEEMTKMIMLGVVLWLGVTFGS 347
           D ++ + E  SRR    E   E    ++E T+ + +G VL + VTFG+
Sbjct: 554 DRRDHIEEIYSRRVVSKEDLAEELDKMQESTQTLGIGSVLIVTVTFGA 601


>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
            8165938-8166012,8166674-8166846,8168697-8168795,
            8169002-8169161,8169321-8169464,8169551-8169723,
            8169796-8169991,8170061-8170258,8170864-8171016,
            8171838-8171959,8172037-8172136,8172221-8172316,
            8172400-8172530,8173717-8173819,8174373-8174555,
            8174632-8174724,8174818-8174853,8175672-8175773,
            8176310-8176472,8176557-8176678,8176994-8177158,
            8177667-8177849,8178679-8178831,8179136-8179288,
            8179373-8179444,8179530-8179664,8179739-8179800,
            8179999-8180096,8180628-8180737,8180832-8181005,
            8181092-8181157,8181847-8181915,8181989-8182099,
            8182418-8182558,8182638-8182766,8182864-8183029,
            8183174-8183388,8184883-8185089,8185501-8185572,
            8185897-8186010,8186090-8186281,8186489-8186569,
            8186654-8186728,8186812-8186878,8187292-8187452,
            8187943-8188116,8188209-8188337,8188421-8188504,
            8188589-8188650,8188728-8188800,8189008-8189142,
            8189790-8189960,8190054-8190319,8190440-8190458
          Length = 2448

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 134  LRQLSRLWRMFDLFNTIADDTCSKKRCSIRLAEEPISPLLPNS 6
            LRQ  R+ ++F L NT+ +++       + +    + PL PNS
Sbjct: 2070 LRQDERVMQLFGLVNTLLENSRKTSEKDLSIQRYAVIPLSPNS 2112


>03_06_0205 -
           32347636-32347646,32347762-32347801,32347959-32348060,
           32348473-32348599,32348893-32350835,32351347-32351367
          Length = 747

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 10  FGSRGEIGSSANLMEQRFFEQVSSAIVLNKSNIRH 114
           FG + +   S+   E + F +  S +VL KS+ RH
Sbjct: 280 FGKKNKEDHSSRAEENKSFRKQKSMVVLEKSDFRH 314


>12_02_1073 -
           25841669-25841902,25842414-25842525,25842615-25842954,
           25845745-25845813,25846106-25846187
          Length = 278

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 399 PPPMYDFPFPSADMLKRLPHI 461
           P P+Y+ P  SA +++ LPHI
Sbjct: 57  PSPLYNLPKISAPIIQNLPHI 77


>02_02_0339 +
           9115297-9115366,9116280-9116407,9117537-9117641,
           9118165-9118259,9119472-9119538,9119685-9119720
          Length = 166

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 324 WLGVTFGSHVSPYPLNLIFISDTIHPPPMYDFPFPSADMLKRLPHITASQTNKSIAISKL 503
           W     G   SPY   +  +  TIH PP Y F  P   +  ++ H   + +N SI +  L
Sbjct: 33  WQATLMGPSDSPYAGGVFLV--TIHFPPDYPFKPPKVALKTKVFHPNIN-SNGSICLDIL 89

Query: 504 Q 506
           +
Sbjct: 90  K 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,915
Number of Sequences: 37544
Number of extensions: 307983
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)