Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e18
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    27   8.4  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    27   8.4  
AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic gl...    27   8.4  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    27   8.4  

>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 276 WNVHHI--LHIPTFF*NISLEPYSWCRHS 196
           WN H +  L+ PT        P+ WCRH+
Sbjct: 407 WNTHTVQNLYSPTCNYESKDSPFGWCRHT 435


>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 348 DYRR*LLAKARHQALSSSSFLPK*WNVHHILHIPTFF*NI 229
           DY++ L    +HQ ++S+ +L   W  H++   P+ F NI
Sbjct: 57  DYQQILDIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNI 96


>Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical
           protein T28F3.6 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 324 KARHQALSSSSFLPK*WNVHHILH 253
           K  H+ +S    LPK   VHH+ H
Sbjct: 183 KTNHEQISGFEILPKLRGVHHVAH 206


>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 315 VVLWLGVTFGSHVSPYPLNLIFISDTIHPP 404
           + + LG+ F ++V+PY  NL F   T H P
Sbjct: 578 ITVTLGMYFVANVTPYEWNLNFSCCTAHEP 607


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 348 DYRR*LLAKARHQALSSSSFLPK*WNVHHILHIPTFF*NI 229
           DY++ L    +HQ ++S+ +L   W  H++   P+ F NI
Sbjct: 57  DYQQILDIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNI 96


>AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-5 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 315 VVLWLGVTFGSHVSPYPLNLIFISDTIHPP 404
           + + LG+ F ++V+PY  NL F   T H P
Sbjct: 138 ITVTLGMYFVANVTPYEWNLNFSCCTAHEP 167


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 285 EEMTKMIMLGVVLWLGVTFGSHVSPYPLNLIFISDTIHPPPMYDFPFPSADMLKRLPHI 461
           +++ K+ +    ++ G+   S +S    N  F+ D I     Y  PF S  M   LP+I
Sbjct: 234 KKLNKIAVTYGSIYTGILLWSIISALNANFNFLPDLIVKFNSYSLPFSSDMMTLALPYI 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,767
Number of Sequences: 27780
Number of extensions: 260597
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)