Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e13
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   112   2e-26
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    30   0.18 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   8.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   8.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    24   8.7  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  112 bits (270), Expect = 2e-26
 Identities = 57/110 (51%), Positives = 77/110 (70%)
 Frame = +1

Query: 73  KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIXEIRKFAEKQMGTPDIRVDTRLNKFLW 252
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAI EI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 253 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTEXVD 402
            +G+RNVP           +D++D A  L+T V  V VA+ K ++T  V+
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK-METTVVE 112


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -3

Query: 221 RMSGVPICFSANFRISXIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 42
           R+  +P+ F    R+    +G   L PT   R+ K   Y    TS M  L  +S LGL +
Sbjct: 45  RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103

Query: 41  VILSFVYRIQLR 6
            +      + LR
Sbjct: 104 FLFVIGMEVDLR 115


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 246 EFV*ASVYSNVRSSHLFFSELSDFXDCSWGTLFKSNTMKSF 124
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 110  VYSRVTTSFMADLPFLSPLGLAIVILS 30
            V+   +TSF  D+ FLS L LA+  L+
Sbjct: 1237 VFYEESTSFALDVDFLSSLQLAVESLT 1263


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 367 QQARKSLV*ITYVRNLHHHYVFVKASH 287
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 422 GVYSWLASTXSVCKPLID 369
           GV  WLAST S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,259
Number of Sequences: 5004
Number of extensions: 30497
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)