Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e11
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   3.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   6.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.1  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   6.1  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    24   8.0  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 215 VESDYENISKYTGVKH*-HKYLKKGAVPSIFSWNMKPVSEETKS 343
           V S+ +  SK  G KH  H   KKG    +F + +   ++ TKS
Sbjct: 488 VVSNEDRTSKKAGKKHHRHHKKKKGGNKRVFGFKLHKYAKPTKS 531


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 116 IDVLQFLSILVQNNASL 66
           + +LQFLSIL QNN  +
Sbjct: 275 VKILQFLSILGQNNPKI 291


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 162 DAKKVFTQKVRGYVINSLWNLTMKTLVNTQVSNININ 272
           DAKK     +RG+  ++      KT++N + SN  IN
Sbjct: 753 DAKKFLNLSLRGFEKHNFSTSLEKTVINFENSNGIIN 789


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 11  SHNIQYLYWNF*LKIILSTMTRCFVPICSEIG 106
           SH ++Y+     L I +  +TR   PIC + G
Sbjct: 190 SHIVKYVLTGIGLLISIVFLTRNLYPICQQAG 221


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 28  FVLEFLIKNYFKHNDALFCTNMLRN 102
           +  + LIK Y K     F TN+LR+
Sbjct: 314 YTCQHLIKRYTKFQRVFFLTNVLRS 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,663
Number of Sequences: 5004
Number of extensions: 34326
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)