Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e11
         (410 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1481|AAF54781.2| 1169|Drosophila melanogaster CG10042-P...    33   0.19 
AY119654-1|AAM50308.1|  574|Drosophila melanogaster RE74287p pro...    28   5.5  
AE013599-653|AAF59087.2|  574|Drosophila melanogaster CG8695-PA ...    28   5.5  

>AE014297-1481|AAF54781.2| 1169|Drosophila melanogaster CG10042-PB,
           isoform B protein.
          Length = 1169

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 110 HQFPKDKKIGRLWLK--AI*REKSIHTKSSRLCHKLFVESDYENISKYTGVKH*HKYLKK 283
           H FP D  I  +W+K   I  E+ I TKS  +C + F   D+  I          KYL K
Sbjct: 25  HSFPLDPIIRAIWIKNSRISLERQI-TKSVLVCSRHFRRLDFNTIRN-------GKYLLK 76

Query: 284 GAV-PSIFSWNMKPVSE 331
             V P++F W     +E
Sbjct: 77  PRVFPTVFPWGKMDTAE 93


>AY119654-1|AAM50308.1|  574|Drosophila melanogaster RE74287p
           protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 28  FVLEFLIKNYFKHNDALFCTNMLRNWSTSIPEGQ-ENW 138
           F  E L K  +  +DA   + ++ NW  ++PEGQ  NW
Sbjct: 317 FNFELLAKISYS-SDAYHYSELIHNWLDNMPEGQVANW 353


>AE013599-653|AAF59087.2|  574|Drosophila melanogaster CG8695-PA
           protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 28  FVLEFLIKNYFKHNDALFCTNMLRNWSTSIPEGQ-ENW 138
           F  E L K  +  +DA   + ++ NW  ++PEGQ  NW
Sbjct: 317 FNFELLAKISYS-SDAYHYSELIHNWLDNMPEGQVANW 353


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,738
Number of Sequences: 53049
Number of extensions: 323515
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)