Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24e08
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 34 0.023
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.094
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 30 0.29
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 29 0.66
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 29 0.66
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 28 1.5
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 27 2.7
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 3.5
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 4.7
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 8.1
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 33.9 bits (74), Expect = 0.023
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +2
Query: 545 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFII 658
I+SI +L A++P+ SA L++ FGR+ L +G + FI+
Sbjct: 87 ILSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIFIV 124
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 31.9 bits (69), Expect = 0.094
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 533 QGSWIVSI-MILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 691
Q SW + MI C+A P+ + D +GRK TLL F IG L ++SL
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKF-CDIYGRKKTLLAAYCVFGIGCFLCGTSRSL 177
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 542 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 691
+I S L + L I + LAD FGRK + + +I I+G I+ + A L
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHL 180
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 29.1 bits (62), Expect = 0.66
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 521 TTAYQGSWIVSIM----ILCSALT-PIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAK 685
TT + S VS++ LC + PI A L++ GRK LL+G F I I V VAK
Sbjct: 162 TTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAK 221
Query: 686 SL 691
+
Sbjct: 222 DI 223
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 533 QGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 691
Q I S + ++ S +LAD GRK LL F+IG +++ ++++
Sbjct: 121 QKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNV 173
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 545 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLP-CCTSR 709
+ + +I +A P+ L+D FGR+ T++ F +G +++SLP C +R
Sbjct: 72 VTAYLITNTAFQPLYGR-LSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMAR 126
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 548 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 691
+S+ + A PI A +++ GRK L++G F I I V VAK +
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDV 186
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +2
Query: 527 AYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIV 679
AYQ S VS+ PS L KFG L A+ IIGW LV +
Sbjct: 78 AYQYSAAVSVFYATYITAETPSVLLVKKFG--PHYYLSAM--IIGWSLVTI 124
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 533 QGSWIV-SIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLP 694
Q S++V S+ I+ +A P+ ++D FGRK + I +II I +A +LP
Sbjct: 125 QVSYLVQSLFIVGNAFGPMLLGPMSDIFGRKWVYVGSLILYIIFQIPQALAYNLP 179
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 548 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 691
+++ +L PI A L++ GRK +L+G + F I I V V K +
Sbjct: 177 MTVFLLGYCSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDI 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,376
Number of Sequences: 5004
Number of extensions: 49380
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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