Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e08
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical ...    35   0.050
AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical ...    35   0.050
AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...    34   0.088
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...    34   0.088
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    31   1.1  
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    30   1.4  
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    29   3.3  

>AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical
           protein C09D4.1b protein.
          Length = 475

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 542 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WILVI 676
           W   I +L   L  IP+A+L DK+G + ++LLGA+   +G WI ++
Sbjct: 80  WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLL 125


>AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical
           protein C09D4.1a protein.
          Length = 586

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 542 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WILVI 676
           W   I +L   L  IP+A+L DK+G + ++LLGA+   +G WI ++
Sbjct: 191 WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLL 236


>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 464 YGWPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADK-FGRKTTLLLG 640
           YG  +   +YL +E    P+ A   ++I  +    + LTP+  + +AD  FGR   +L G
Sbjct: 32  YGMKTILFIYLITEHEFSPSKA---TFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYG 88

Query: 641 AIPFIIGWILV 673
           +  +++G +L+
Sbjct: 89  SSIYVVGHVLL 99


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 464 YGWPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADK-FGRKTTLLLG 640
           YG  +   +YL +E    P+ A   ++I  +    + LTP+  + +AD  FGR   +L G
Sbjct: 32  YGMKTILFIYLITEHEFSPSKA---TFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYG 88

Query: 641 AIPFIIGWILV 673
           +  +++G +L+
Sbjct: 89  SSIYVVGHVLL 99


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 473 PSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLG-AIP 649
           P+P    ++  +    T AY  +WI +I  + + +  +   +L D FGRK    +G +I 
Sbjct: 75  PAPFHSMVQDFKMFCGTKAYDSAWIATIQFIGALVGALVYGHLGDHFGRKPVSFVGISIG 134

Query: 650 FIIG 661
            I G
Sbjct: 135 IIFG 138


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 521 TTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLG 640
           T AY  +W+ +I  +   +  I   +L D FGRK     G
Sbjct: 91  TKAYDAAWVATIQFIGVLIGAITYGHLGDHFGRKPVSFFG 130


>U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical
           protein F48E3.2 protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +2

Query: 500 SEESSIPTTAYQGSW--IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILV 673
           +E  ++  + ++ +W  +++I  +  A   + SA +AD+ GRK TL LG    ++  ++ 
Sbjct: 46  NEPYTLSNSEFEWAWSAMLAIYFIGFAAGSVISAGVADRIGRKWTLFLGTCGSLLSSLIA 105

Query: 674 IVA 682
           + A
Sbjct: 106 LFA 108


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 599 LADKFGRKTTLLLGAIPFIIGWILVIVAKSL 691
           ++D FGRK    + ++  +IGW++V+ +++L
Sbjct: 149 ISDSFGRKIGSQVASLGMLIGWLIVVQSRNL 179


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 590 SAYLADKFGRKTTLLLGAIPFIIGWILVIVAK 685
           S +LADKFGRK+TLL   I  ++  + +  +K
Sbjct: 118 SGFLADKFGRKSTLLYNNILALLAAVCLSTSK 149


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 542 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVA 682
           WI  I+ +C+ + P    +  +K GR+   L      ++  +L+ V+
Sbjct: 320 WISVILSICNLIGPFAPMFFIEKLGRRKLFLFSCAGVVVSLVLIGVS 366


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +2

Query: 470 WPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIP 649
           W +  L +L+ +   + T    G +I +   LC+A   + +  LAD  G ++  LL A+ 
Sbjct: 26  WTTTLLSFLQWDTEEVMTITDLG-YIQAFGSLCNAFGALAAGQLADTLGAQSMFLLSAVF 84

Query: 650 FIIGWILVIVAKS 688
             I +  + +A+S
Sbjct: 85  TAIYYSGISLARS 97


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 479 PTLLYLESEESSIPTTAYQ--GSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPF 652
           PT  Y+   + ++   + Q   S +  I      +T IP+  L D F  K  L+  A  +
Sbjct: 21  PTEPYMYEYQHTVLNMSEQTLNSQVYPIWTYSYLITLIPAFLLTDVFLYKPLLVFEAFSY 80

Query: 653 IIGWILVIVAKSL 691
            + W++ +  KS+
Sbjct: 81  FLCWVIFVFGKSV 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,126
Number of Sequences: 27780
Number of extensions: 260864
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)