Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e07
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   127   1e-30
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   6.3  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   8.3  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  127 bits (307), Expect = 1e-30
 Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
 Frame = +1

Query: 157 STLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKA-NGISKVLVA 333
           S L L EH    LSPA+ + + AAK+ GGDV   V G      ++ +AK+ N + KV+  
Sbjct: 29  SVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQKVAKSVNDLKKVIYV 88

Query: 334 ESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIK 513
           E+  ++    + +  ++    K+ + +H+ +  +  GK V+PR+AA  DV  I+DIIG+ 
Sbjct: 89  ENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVV 148

Query: 514 DANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAA 648
            A+TFVR  YAGN  +T+  KDPIK++TVR +AF A P  G  AA
Sbjct: 149 SADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEGAA 193


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 3/191 (1%)
 Frame = -1

Query: 692  STRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNIALPA*IVLTKVLAS 513
            +T S   S + ++++A+   S+ S+      T  +      + +  +L + I    V  S
Sbjct: 1031 ATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGS 1090

Query: 512  LIPMISVIGDTSSLAATRGSTVFPKAVAGAKI*VNLNCFCVAKIRGVRVSAVKPLKTSLS 333
                ++ +  TSS+  T  ST+   A + A +  +              S+     T+  
Sbjct: 1091 PTSSVTAVSSTSSVEGTASSTI-AAAASAATLSSDAASGSSTVTSSATASSSSSAATTAD 1149

Query: 332  ATKTLDIP---FALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTSLLCSASTK 162
            ++ T D P   F   +D+ AG   V A S+ + P  F       W   D  S++  ++  
Sbjct: 1150 SSVTTDTPSNDFNANVDT-AGLWYVSALSSYSVPAGFA------WTTIDGFSVVMPSANA 1202

Query: 161  VLCKRRSCPDK 129
               K+RS P K
Sbjct: 1203 Y--KKRSLPIK 1211


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 654  INCCRPSLQWLCRECCATNSDDLDRIFGLKG*YSVTSI---NCSHKGISILDTNDI 496
            +NC   +  W+CR+C +  S  +     + G  S + +   +C+   + + DT+DI
Sbjct: 1131 MNCSDYAQSWVCRDCGSIIS--IMSTISMNGVGSASEVRCRSCAKPALGLEDTSDI 1184


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 295 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 179
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 254 TETSPPIFLAAFNVFWVAGDSTSLLCSASTKV 159
           T T P +FLA   +F   G+    LCS    V
Sbjct: 395 TPTYPELFLAKAKIFLCMGEIEEALCSFKRSV 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,776
Number of Sequences: 5004
Number of extensions: 60923
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)