Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24e07
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 122 4e-28
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 38 0.006
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 3.8
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 29 3.8
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 29 3.8
03_02_0233 - 6622345-6622538,6623526-6624120 29 5.0
01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857 29 5.0
02_05_1275 - 35395228-35395642,35396682-35397250 28 6.6
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 28 8.7
06_02_0363 - 15172528-15173224,15174564-15174856 28 8.7
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 28 8.7
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 28 8.7
03_01_0056 - 471338-471919,472013-472213 28 8.7
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 28 8.7
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 122 bits (293), Expect = 4e-28
Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 9/178 (5%)
Frame = +1
Query: 142 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGD---VSVLVAGTKCG--PAAESIAKA 306
L R STLV+AEH + P++ + L AA+ IG D VS+L+ G+ G AAE A +
Sbjct: 27 LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86
Query: 307 NG-ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDV 483
+ +S+VLVA+SDVF AE L+ + Q + ++H++A +T+FGK +LPR AA LDV
Sbjct: 87 HPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAALLDV 146
Query: 484 SPITDIIGIKDANTFVRTIYAGNAILTLE--AKDPIKVITVRGTAF-PAEPLEGGSAA 648
SP+TD+ I + FVR IYAGNA+ T+ +DP ++++R T+F P E + A
Sbjct: 147 SPVTDVTSISEPRVFVRPIYAGNALCTVRYTGEDPC-MMSIRSTSFSPTEAMSEAKVA 203
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 172 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 294
+ +NN +L PA N ++ A+K+ GD+S++V G G A S
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGALAS 209
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 193 LSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 294
L P T LNAA + G + G+ C P A S
Sbjct: 121 LDPLTHRPLNAAAAVAGHHHLAAGGSSCSPDATS 154
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 277 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 188
H+WF P A HH W L++ VP
Sbjct: 164 HLWFDPTAGFHHYAILWNPDQILFLVDDVP 193
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 172 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 294
+ +NN +L A + ++ A++ GD++V+V G G A S
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGAMAS 182
>03_02_0233 - 6622345-6622538,6623526-6624120
Length = 262
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 394 QKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGN 552
+K + F A A A G + LPR A +SP + ++ + A +FV + +G+
Sbjct: 67 EKDWSFLDAAAAAAAAGGS-LPRALAAGALSPASRVLAVTPAPSFVDALLSGH 118
>01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857
Length = 92
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 546 SINCSHKGISILDTNDISYW*HIKLGRNS 460
++ C + I++ +D YW HIK+ R++
Sbjct: 23 AVGCRRRSHHIIECDDAEYWHHIKIERST 51
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 277 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 188
H+WF P A HH W L++ VP
Sbjct: 168 HLWFDPTADFHHYAILWTSDHIIFLVDDVP 197
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 614 SLQSHWREGLQQLIKHLRATIRLIWL 691
+L SH REG+++L+ +RA IR I L
Sbjct: 104 ALNSHSREGIKELLNAVRAKIREIKL 129
>06_02_0363 - 15172528-15173224,15174564-15174856
Length = 329
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 332 ATKTLDIPFA-LAMDSAAGPHLVPATSTETSP 240
A+ + +PFA LA DS A PH S+ TSP
Sbjct: 291 ASLIVRVPFADLATDSGASPHSSSGWSSPTSP 322
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 305 ALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTSLLCSASTKVL 156
A + +AA P L A + T+P LAA + +T+ L +A+T V+
Sbjct: 60 AREVPAAAAPRLATAATCFTAPARLLAAATTAALIASTTACLLAATTGVI 109
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 142 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANGIS 318
L +L+ + H LSP + + G + S VLVA K G E I+ + +
Sbjct: 99 LAQLEKIRDESRHQQTELSPDNMTDIPYTEGGGKNGSWVLVACDKPGANMEEISGIDNEN 158
Query: 319 KVLVAESDVFKGFTA 363
VLV + D+ G T+
Sbjct: 159 YVLVNDDDIIDGMTS 173
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 277 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 188
H+WF P A HH W L++ VP
Sbjct: 118 HLWFDPTADFHHYAILWNPDHIVFLVDDVP 147
>01_06_1790 -
39888313-39888350,39888437-39888530,39888612-39888836,
39888944-39889018,39889144-39889212,39889319-39889384,
39889492-39889713,39889794-39890681,39890973-39891053,
39892546-39892598,39893010-39893088,39893218-39893319
Length = 663
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 320 LDIPFALAMDSAAGPHLVPATSTETSPP 237
L++ + +MD+AAG HL PA S+ S P
Sbjct: 201 LNLNWDQSMDAAAGGHLDPALSSMVSSP 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,222,193
Number of Sequences: 37544
Number of extensions: 398750
Number of successful extensions: 1243
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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