Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24e07
(725 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J04058-1|AAA52406.1| 333|Homo sapiens ETFA protein. 230 4e-60
BT009796-1|AAP88798.1| 333|Homo sapiens electron-transfer-flavo... 230 4e-60
BC095457-1|AAH95457.1| 333|Homo sapiens electron-transfer-flavo... 230 4e-60
BC015526-1|AAH15526.1| 333|Homo sapiens electron-transfer-flavo... 230 4e-60
AF436657-1|AAN03712.1| 333|Homo sapiens electron transfer flavo... 230 4e-60
AK096678-1|BAC04838.1| 738|Homo sapiens protein ( Homo sapiens ... 32 2.4
AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein. 32 2.4
BC038808-1|AAH38808.1| 373|Homo sapiens apolipoprotein B mRNA e... 30 9.7
>J04058-1|AAA52406.1| 333|Homo sapiens ETFA protein.
Length = 333
Score = 230 bits (562), Expect = 4e-60
Identities = 114/197 (57%), Positives = 147/197 (74%)
Frame = +1
Query: 133 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 312
+ L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC A+ + K G
Sbjct: 13 AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72
Query: 313 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 492
I+KVLVA+ DV+KG E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73 IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132
Query: 493 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGD 672
+DII IK +TFVRTIYAGNA+ T++ + +KV +VRGT+F A GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA-SST 191
Query: 673 YKTDLVEFLKQELTKSD 723
++ E+L Q+LTKSD
Sbjct: 192 SPVEISEWLDQKLTKSD 208
>BT009796-1|AAP88798.1| 333|Homo sapiens
electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) protein.
Length = 333
Score = 230 bits (562), Expect = 4e-60
Identities = 114/197 (57%), Positives = 147/197 (74%)
Frame = +1
Query: 133 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 312
+ L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC A+ + K G
Sbjct: 13 AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72
Query: 313 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 492
I+KVLVA+ DV+KG E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73 IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132
Query: 493 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGD 672
+DII IK +TFVRTIYAGNA+ T++ + +KV +VRGT+F A GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA-SST 191
Query: 673 YKTDLVEFLKQELTKSD 723
++ E+L Q+LTKSD
Sbjct: 192 SPVEISEWLDQKLTKSD 208
>BC095457-1|AAH95457.1| 333|Homo sapiens
electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) protein.
Length = 333
Score = 230 bits (562), Expect = 4e-60
Identities = 114/197 (57%), Positives = 147/197 (74%)
Frame = +1
Query: 133 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 312
+ L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC A+ + K G
Sbjct: 13 AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72
Query: 313 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 492
I+KVLVA+ DV+KG E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73 IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132
Query: 493 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGD 672
+DII IK +TFVRTIYAGNA+ T++ + +KV +VRGT+F A GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA-SST 191
Query: 673 YKTDLVEFLKQELTKSD 723
++ E+L Q+LTKSD
Sbjct: 192 SPVEISEWLDQKLTKSD 208
>BC015526-1|AAH15526.1| 333|Homo sapiens
electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) protein.
Length = 333
Score = 230 bits (562), Expect = 4e-60
Identities = 114/197 (57%), Positives = 147/197 (74%)
Frame = +1
Query: 133 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 312
+ L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC A+ + K G
Sbjct: 13 AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72
Query: 313 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 492
I+KVLVA+ DV+KG E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73 IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132
Query: 493 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGD 672
+DII IK +TFVRTIYAGNA+ T++ + +KV +VRGT+F A GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA-SST 191
Query: 673 YKTDLVEFLKQELTKSD 723
++ E+L Q+LTKSD
Sbjct: 192 SPVEISEWLDQKLTKSD 208
>AF436657-1|AAN03712.1| 333|Homo sapiens electron transfer
flavoprotein alpha-subunit protein.
Length = 333
Score = 230 bits (562), Expect = 4e-60
Identities = 114/197 (57%), Positives = 147/197 (74%)
Frame = +1
Query: 133 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 312
+ L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC A+ + K G
Sbjct: 13 AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72
Query: 313 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 492
I+KVLVA+ DV+KG E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73 IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132
Query: 493 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGD 672
+DII IK +TFVRTIYAGNA+ T++ + +KV +VRGT+F A GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA-SST 191
Query: 673 YKTDLVEFLKQELTKSD 723
++ E+L Q+LTKSD
Sbjct: 192 SPVEISEWLDQKLTKSD 208
>AK096678-1|BAC04838.1| 738|Homo sapiens protein ( Homo sapiens
cDNA FLJ39359 fis, clone PEBLM2004290. ).
Length = 738
Score = 31.9 bits (69), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 542 MLVTLY*PLRPKILSRSSLFVAQHSLQSHWREGLQQLIKHLRATIRL 682
ML L + K++ + + Q W +GLQ+ +KHL+ +I+L
Sbjct: 11 MLKKLSSKVMTKVIKKKIILAIQQLGNGEWTQGLQKRLKHLKGSIQL 57
>AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein.
Length = 2467
Score = 31.9 bits (69), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 542 MLVTLY*PLRPKILSRSSLFVAQHSLQSHWREGLQQLIKHLRATIRL 682
ML L + K++ + + Q W +GLQ+ +KHL+ +I+L
Sbjct: 340 MLKKLSSKVMTKVIKKKIILAIQQLGNGEWTQGLQKRLKHLKGSIQL 386
>BC038808-1|AAH38808.1| 373|Homo sapiens apolipoprotein B mRNA
editing enzyme, catalytic polypeptide-like 3F protein.
Length = 373
Score = 29.9 bits (64), Expect = 9.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 268 FQPQALRHHLQFSWQHSMYFGLLEIVPHCCARRA-LKYFAND 146
F + ++HH SW+ ++ ++ HC A R L +F +D
Sbjct: 220 FTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDD 261
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,808,741
Number of Sequences: 237096
Number of extensions: 2228771
Number of successful extensions: 17436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17436
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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