Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24e07
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 204 5e-53
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 204 5e-53
Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.090
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 31 1.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 31 1.1
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 29 4.5
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 204 bits (498), Expect = 5e-53
Identities = 102/193 (52%), Positives = 138/193 (71%), Gaps = 1/193 (0%)
Frame = +1
Query: 148 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVL 327
RL STLV+AEH+ L+P T N + AA K+G +VSVLV G AE +AK NG+ +VL
Sbjct: 19 RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78
Query: 328 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 507
VA+ + K E + P+ILA+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+
Sbjct: 79 VAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTE 138
Query: 508 IKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTD 684
+ A++F RT+YAGNA+ +++ PIK++T RGT+F PA+ EGGS A++ AP D KTD
Sbjct: 139 VHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTD 196
Query: 685 LVEFLKQELTKSD 723
L EFL QEL+KS+
Sbjct: 197 LSEFLGQELSKSE 209
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 204 bits (498), Expect = 5e-53
Identities = 102/193 (52%), Positives = 138/193 (71%), Gaps = 1/193 (0%)
Frame = +1
Query: 148 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVL 327
RL STLV+AEH+ L+P T N + AA K+G +VSVLV G AE +AK NG+ +VL
Sbjct: 19 RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78
Query: 328 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 507
VA+ + K E + P+ILA+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+
Sbjct: 79 VAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTE 138
Query: 508 IKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTD 684
+ A++F RT+YAGNA+ +++ PIK++T RGT+F PA+ EGGS A++ AP D KTD
Sbjct: 139 VHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTD 196
Query: 685 LVEFLKQELTKSD 723
L EFL QEL+KS+
Sbjct: 197 LSEFLGQELSKSE 209
>Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical
protein M28.2 protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.090
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = +1
Query: 61 IKTDFLNKILLIKMFAPNSRHLFLSGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG 240
+K+ + I+ F N + G R+ T V +++ +T+ T N K+
Sbjct: 200 VKSSTSQALAEIRSFIKNYAEDVIDGTTTRVGLTAV-NNFDSDAFKRSTEVTYNKGVKLI 258
Query: 241 GDVSVLVAGTKCGPAAESIAKANGISKVLVAES 339
GD+ L K GP + A AN + KV++ +S
Sbjct: 259 GDLQTLQMSPKTGPDCRNTA-ANLLEKVIIIQS 290
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -3
Query: 627 WLCRECCAT--NSDDLDRIFGLKG*YSVTSINCSHKGISILDTNDISYW*HIKLGRNSWQ 454
WLCR CC N + + G +T I+CS GI+ N + H+K +
Sbjct: 1601 WLCRNCCVVFENQPKYQKHMAIHGDTCLTCIHCS--GIAF---NHTAIQNHMK-SHEEKK 1654
Query: 453 HRLSESSCWC*DMSEFELF 397
R S +C C S+ LF
Sbjct: 1655 VRYSCGTCLCTFASDLALF 1673
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -3
Query: 627 WLCRECCAT--NSDDLDRIFGLKG*YSVTSINCSHKGISILDTNDISYW*HIKLGRNSWQ 454
WLCR CC N + + G +T I+CS GI+ N + H+K +
Sbjct: 1601 WLCRNCCVVFENQPKYQKHMAIHGDTCLTCIHCS--GIAF---NHTAIQNHMK-SHEEKK 1654
Query: 453 HRLSESSCWC*DMSEFELF 397
R S +C C S+ LF
Sbjct: 1655 VRYSCGTCLCTFASDLALF 1673
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 409 FTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDP 582
++ ++P T G TV+ VA + +P+T + + D NT +GN +L + + P
Sbjct: 339 YSTTISPTTPIGSTVITVVANSENNTPLTYSL-LADTNTVSIDEVSGNVVLRKKLEKP 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,548
Number of Sequences: 27780
Number of extensions: 349354
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -