Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24e04
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57284-1|AAB25906.1|  437|Caenorhabditis elegans S-adenosylhomoc...   318   2e-87
M64306-1|AAA28062.1|  437|Caenorhabditis elegans S-adenosylhomoc...   318   2e-87
AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical ...   318   2e-87
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   2.7  
U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...    29   3.5  
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    28   6.2  

>S57284-1|AAB25906.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  318 bits (782), Expect = 2e-87
 Identities = 146/192 (76%), Positives = 166/192 (86%)
 Frame = +2

Query: 173 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 352
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 353 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 532
           IETL  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124

Query: 533 KPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVND 712
           +PLNMILDDGGDLTNLVH KYP  L  ++G++EETTTGVHNL KM  +G LKVPAINVND
Sbjct: 125 QPLNMILDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVND 184

Query: 713 SVTKSKFDNLYG 748
           SVTKSKFDNLYG
Sbjct: 185 SVTKSKFDNLYG 196


>M64306-1|AAA28062.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  318 bits (782), Expect = 2e-87
 Identities = 146/192 (76%), Positives = 166/192 (86%)
 Frame = +2

Query: 173 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 352
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 353 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 532
           IETL  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124

Query: 533 KPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVND 712
           +PLNMILDDGGDLTNLVH KYP  L  ++G++EETTTGVHNL KM  +G LKVPAINVND
Sbjct: 125 QPLNMILDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVND 184

Query: 713 SVTKSKFDNLYG 748
           SVTKSKFDNLYG
Sbjct: 185 SVTKSKFDNLYG 196


>AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical
           protein K02F2.2 protein.
          Length = 437

 Score =  318 bits (782), Expect = 2e-87
 Identities = 146/192 (76%), Positives = 166/192 (86%)
 Frame = +2

Query: 173 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 352
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 353 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 532
           IETL  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124

Query: 533 KPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVND 712
           +PLNMILDDGGDLTNLVH KYP  L  ++G++EETTTGVHNL KM  +G LKVPAINVND
Sbjct: 125 QPLNMILDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVND 184

Query: 713 SVTKSKFDNLYG 748
           SVTKSKFDNLYG
Sbjct: 185 SVTKSKFDNLYG 196


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 436 CSCGLVLCTI-NVTAGPLYLCSQFY*SLNKNRCLYCHV*AAGYSGTFEYFSWSI 278
           C CG+++  I N+TA         Y  +N    L   + + G+   F YF WS+
Sbjct: 442 CECGILIAVIENITALITQFFLMCYLGVNAACALQSLLKSPGWRPGFRYFHWSL 495


>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 596 PDLLKDVKGITEETTTGVHNL 658
           PDL  DVK +TEE T  VH+L
Sbjct: 316 PDLEDDVKFLTEELTLSVHDL 336


>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
           (imitation swi) homologprotein 1 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = +2

Query: 53  RERVLQYQVPIYFR-YFNKNNLKRKQ----QVNLP*VYQTLYYKMKPPYKIADEKLAEWG 217
           RER   YQV +Y++      N   KQ    +  LP V+   +Y  +  +++ D+++  + 
Sbjct: 690 RERKANYQVDLYYKEAMRAGNPTEKQSKAPRPKLPQVFDFQFYPRR-LFELLDKEIYHYR 748

Query: 218 RKEIMLAE--KEMPGLMACRRKYAPAKILKGAR 310
           +    +AE  K++P   A +R+    K++  AR
Sbjct: 749 KTIGYVAERPKDVPPKEAEKRQAEEQKLINNAR 781


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,074
Number of Sequences: 27780
Number of extensions: 364010
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)