Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24e02
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 30 0.28
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me... 28 1.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.4
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 26 4.5
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 4.5
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 4.5
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 25 7.9
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 7.9
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +1
Query: 286 YLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAP 387
Y G + +G+++L VRN + +G++++ +H GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.37
Identities = 28/122 (22%), Positives = 47/122 (38%)
Frame = -2
Query: 377 TGCTDTILVPWSTVPLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILS 198
T CT + VP+++ P+ + +TI S TP P + +S+ S L+
Sbjct: 494 TNCTTSTSVPYTSTPVTSSNYTISSS-TP-VTSTPVTTTNCTTSTSVLYTSTPVTSTPLA 551
Query: 197 RLTCGTKYGGPPISTSLASPVNPGDXXXXXXXXXXXXSATDTSTNLKFVVKPFDNTQATS 18
C T P ST + S + TST++ + P + +TS
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTS 611
Query: 17 SN 12
S+
Sbjct: 612 SS 613
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 383 APTGCTDTILVPWSTVPLRTLRFTIPSQFTP 291
A T CT + VP+++ P+ + +TI S TP
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSS-TP 580
>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
RNA-mediated gene silencing |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 226 LEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRI 360
L H+N DPA +GAGA Y+G + + +LS T+ QGT++
Sbjct: 220 LIHVNEDPACGSGAGA-VGVYIGSSQKTPTSLSF---TISQGTKL 260
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 496 VVAKNRTGKSNFITSIRETLKTHY 567
+V +N +GKSNF +IR L Y
Sbjct: 30 IVGRNGSGKSNFFAAIRFVLSDAY 53
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 281 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 168
HGP + A + L S + LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = -2
Query: 374 GCTDTILVPWSTVPLRTLRFTIPSQFTPRY------GHGPAPAPAR 255
G +D +VPW +F +P+ + PR+ G+ AP P +
Sbjct: 142 GMSDGSVVPWDVTRHCLGKFKVPNLYVPRHEEWRMMGYSYAPVPGK 187
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 495 FNYLSGFPFRQQVVSEQRSPGLVVGQLLLEVAAA 394
FNY +P + ++ + R PG++ L E A+A
Sbjct: 474 FNYFREYPGSKDIMLDGRGPGMLEKMYLSEKASA 507
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 103 EPPYYLK--SPGLTGDAKLVEIGGPPYLVPQV 192
EP YLK S +TG + +++G +L P++
Sbjct: 261 EPDRYLKYASESITGHSTTIDVGFERFLAPEI 292
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 178 LVPQVKRDKIYDLAKLLEHLNR 243
LVP K K Y L L +HLNR
Sbjct: 260 LVPNEKNPKEYILKLLFDHLNR 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.139 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,606
Number of Sequences: 5004
Number of extensions: 59687
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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