Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24e02
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53149-6|AAZ82856.1| 284|Caenorhabditis elegans Hypothetical pr... 159 2e-39
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 30 1.8
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 30 1.8
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 30 1.8
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 30 1.8
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 30 1.8
Z73103-2|CAA97425.2| 400|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 27 9.8
>U53149-6|AAZ82856.1| 284|Caenorhabditis elegans Hypothetical
protein C24B5.4 protein.
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 1/224 (0%)
Frame = +1
Query: 31 VLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIY 210
V L +NF+ VEV++ D PDL++PP+ KS G + ++ E+GGP L P D +
Sbjct: 1 VFQTSLLSNFENVEVNIVDCPDLSKPPFNQKSSGFGHNLRIAEVGGPGNLYPGFHIDHQF 60
Query: 211 DLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAPK 390
D+ K+ + A + G GAGPWP +G NCE + +++++ G V GTRI ++
Sbjct: 61 DIPKIGKVCEHPEAAVFGPGAGPWPIVGQNCEMVADVNLKTGEV--GTRIAEIN----SN 114
Query: 391 GSSGYLQQQLPNDETRTALLGNYLLTEG-KPGKVIKVVAKNRTGKSNFITSIRETLKTHY 567
Y+Q+ + DE + +L+ N L++ K V+ A R G+ N IR+ L+ H+
Sbjct: 115 SDKRYVQRII--DEPKFSLMANLALSDADKSSTVVHFKASVRKGEKNLTNCIRDGLQEHF 172
Query: 568 GDKVVGLGGAFVLRAGRGYFHVMPDFSRAPLCSDAAVDSWLHYF 699
G K+V L G F+++ G+ HVMPDF P ++A VD WL+YF
Sbjct: 173 GKKIVSLAGQFIIQTGKARLHVMPDFPGCPFENNAEVDKWLNYF 216
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -3
Query: 487 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 308
P +++PS S + T + +WA+ G P + G PT G + GH G+ +
Sbjct: 213 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 267
Query: 307 PRSSRPGTATV 275
P SSRP +V
Sbjct: 268 PSSSRPSICSV 278
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -3
Query: 487 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 308
P +++PS S + T + +WA+ G P + G PT G + GH G+ +
Sbjct: 288 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 342
Query: 307 PRSSRPGTATV 275
P SSRP +V
Sbjct: 343 PSSSRPSICSV 353
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -3
Query: 487 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 308
P +++PS S + T + +WA+ G P + G PT G + GH G+ +
Sbjct: 222 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 276
Query: 307 PRSSRPGTATV 275
P SSRP +V
Sbjct: 277 PSSSRPSICSV 287
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -3
Query: 487 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 308
P +++PS S + T + +WA+ G P + G PT G + GH G+ +
Sbjct: 366 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 420
Query: 307 PRSSRPGTATV 275
P SSRP +V
Sbjct: 421 PSSSRPSICSV 431
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -3
Query: 487 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 308
P +++PS S + T + +WA+ G P + G PT G + GH G+ +
Sbjct: 213 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 267
Query: 307 PRSSRPGTATV 275
P SSRP +V
Sbjct: 268 PSSSRPSICSV 278
>Z73103-2|CAA97425.2| 400|Caenorhabditis elegans Hypothetical
protein C08F8.3 protein.
Length = 400
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 361 VSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSN 528
VS PV AP S QQQ P +TA +GN+L + G ++ V + T + +
Sbjct: 308 VSKAPVVAPS-SQLQQQQQQPCSSNQTARIGNFLERDQVRGNLLGVPLSSSTPRGS 362
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 373 PVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRET 552
PVG P G L +Q E + LLG + P + V + K + I +E
Sbjct: 1514 PVGPPAIKKGKLSRQPGRREGQKPLLGPFQRRSADP--QVDNVGSHEVRKDSKILDQQER 1571
Query: 553 LKTHYG 570
L+ H+G
Sbjct: 1572 LQDHHG 1577
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 373 PVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRET 552
PVG P G L +Q E + LLG + P + V + K + I +E
Sbjct: 1514 PVGPPAIKKGKLSRQPGRREGQKPLLGPFQRRSADP--QVDNVGSHEVRKDSKILDQQER 1571
Query: 553 LKTHYG 570
L+ H+G
Sbjct: 1572 LQDHHG 1577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.139 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,390
Number of Sequences: 27780
Number of extensions: 374292
Number of successful extensions: 1153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -