Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24d14
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 64 4e-12
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 0.76
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 1.0
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 1.8
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 1.8
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 2.3
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 2.3
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 3.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 3.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 5.3
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 24 5.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 23 7.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 7.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 23 7.1
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 23 9.3
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 23 9.3
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 64.1 bits (149), Expect = 4e-12
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Frame = +3
Query: 9 KTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWNGRKGISQDDAKKQYI 179
K P+ DE L LY+L+KQAT+GD N +P GL++ KW AW KG S++DA +YI
Sbjct: 16 KETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWEELKGKSKEDAASEYI 74
Query: 180 ENAEKLHSKY 209
++L +KY
Sbjct: 75 SFVDELKTKY 84
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 0.76
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 217 IYAYLEWSFSAFS-MYCFLASSWEMP 143
++ +L W + + +YCF SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 1.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 115 PSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLN 252
P H V+ SP T +N S+ NS+P KLL+ I LN
Sbjct: 44 PYSDHARVSN-SPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLN 88
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 139 RPFHAFHLALSTRPLGWAMLTSPMV 65
+ FHA L L +RP G+ + +P++
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPIL 326
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 45 YSLYKQATIGDVNIAQPSGLVESAKW 122
Y L+ + + D+N A+ +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 2.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 AVLWRAPSGR--HGTVAKASPKTMPRSNTSKMRRNSTPNT 210
AVL R PSG GT+A P ++ N S RRNS+ ++
Sbjct: 453 AVLNR-PSGETCSGTLALYRPNSLALKNQSSHRRNSSTSS 491
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 2.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 204 WSGVSPHFR-CIASWHRLGRCLCDRSM 127
W SP+ R I +HRLGR L +R +
Sbjct: 457 WRLASPNIRFLITLYHRLGRILRERKL 483
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 3.1
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Frame = +1
Query: 16 SPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASP-------------- 153
SP R P + LP L P + P+ HG + SP
Sbjct: 393 SPEGYDNNRTNPTVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVHTTHGLVSDI 452
Query: 154 KTMPRSNTSKMRRNSTPNTHKL 219
+ +P ++ MR +STP +H L
Sbjct: 453 RPLPSVSSPIMRADSTPISHNL 474
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 83 HCPAQRSCGERQVEGMERSQRHLPRRCQE 169
+CPAQR G V G S+R + + +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 23.8 bits (49), Expect = 5.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GTGRPSPVTMRTLRCTPCTSRL 66
G R +P + TL TP TSRL
Sbjct: 483 GKKRVAPQLLTTLSATPSTSRL 504
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 3 NWKTKPSDDENLALYSLYKQATIGDVNIAQPSG 101
NW+T DD +LA + K++ +++ ++ G
Sbjct: 532 NWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 169 SNTSKMRRNSTPNTHKL 219
SN+SKM RN++ N +L
Sbjct: 1130 SNSSKMTRNTSKNNRRL 1146
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.4 bits (48), Expect = 7.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 94 PAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYL-NYALSHD 270
PAV R S R T + +T PR+ + +N P+ + L + YL N + ++
Sbjct: 476 PAVQTRNHSKRTRTATSSVEETTPRAFNVPIAQNKNPSELEFLEHAR--QYLANESKYNE 533
Query: 271 FLK 279
F+K
Sbjct: 534 FIK 536
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 205 LEWSFSAFSMYCFLASSWEMPLRPFH 128
LEW FS++ +++ + + PFH
Sbjct: 114 LEWLIRRFSIHEYVSDEFILSFLPFH 139
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 23.0 bits (47), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 151 PKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLN 252
P T +N S+ NS+P KLL+ I LN
Sbjct: 55 PNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLN 88
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 23.0 bits (47), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 148 SPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLN 252
SP T +N S+ NS+P KLL+ I N
Sbjct: 54 SPNTHRENNPSRSTDNSSPLLIKLLISFTSIILFN 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,759
Number of Sequences: 5004
Number of extensions: 27878
Number of successful extensions: 77
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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