Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24d14
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   1.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   9.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   9.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 124 FHLALSTRPLGWAMLTSP 71
           FHL ++T P G A + SP
Sbjct: 363 FHLYINTAPCGDARIFSP 380


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 73  VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLR 228
           ++ T+P    + +   G+H  ++K   KTM   + +K      PN  +L+ R
Sbjct: 96  ILTTMPLLINVVKYLGGKHKFISKKIKKTMENKDITK---RPLPNESQLIKR 144


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 136  PFHAFHLALSTRPLGWAMLTSPMV 65
            PF + H  L+ RPL     T PM+
Sbjct: 1040 PFVSNHDILNLRPLSMEKGTRPMI 1063


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 18   PSDDENLALYSLYKQATIGDVNIAQPSGLVE 110
            P+D+  +  Y+++ +   GD + AQ S  V+
Sbjct: 1390 PTDNAPIHGYTIHYKPEFGDWDTAQISSTVQ 1420



 Score = 20.2 bits (40), Expect = 5.5
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 73   VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPN--THK 216
            ++++  S  V WR PS  +G + + +  T   +      +   PN  TH+
Sbjct: 1189 LVMSSESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHE 1238



 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 61   RLP*VMLTLPSPAVLWR 111
            +LP + + +P+P V W+
Sbjct: 1295 KLPCLAVGVPAPEVTWK 1311


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 52 REYSARFSSSL 20
          R YS RFSSS+
Sbjct: 22 RRYSKRFSSSI 32



 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 159 RLGRCLCDRSMPSTWRSP 106
           R    + DR  PS+ RSP
Sbjct: 27  RFSSSIVDRRSPSSSRSP 44


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 88  PSPAVLWRAPSGRHGTVAKASPKT 159
           P+P   W A +G    +  + P+T
Sbjct: 265 PTPEYRWYAQTGSEPMLVLSGPRT 288



 Score = 19.4 bits (38), Expect = 9.6
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = +1

Query: 85  LPSPAVLWRAPSG 123
           +P+P ++W+  +G
Sbjct: 736 VPTPTIVWKKATG 748


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 88  PSPAVLWRAPSGRHGTVAKASPKT 159
           P+P   W A +G    +  + P+T
Sbjct: 265 PTPEYRWYAQTGSEPMLVLSGPRT 288



 Score = 19.4 bits (38), Expect = 9.6
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = +1

Query: 85  LPSPAVLWRAPSG 123
           +P+P ++W+  +G
Sbjct: 732 VPTPTIVWKKATG 744


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 194 FLRIFDVLLLGIVLGDA 144
           F+ + +  L+ IVLGD+
Sbjct: 319 FMALMEYCLVNIVLGDS 335


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = -1

Query: 208 YLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWA 86
           Y   S   F          E+P R   A  L L+   L WA
Sbjct: 50  YFLLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFLAWA 90


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 146 HLPRRCQEAIHRKC 187
           ++ R+CQE   +KC
Sbjct: 234 YMRRKCQECRLKKC 247


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 146 HLPRRCQEAIHRKC 187
           ++ R+CQE   +KC
Sbjct: 31  YMRRKCQECRLKKC 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,258
Number of Sequences: 438
Number of extensions: 2348
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)