Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24d13
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 225 4e-60
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 63 4e-11
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 62 1e-10
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 61 2e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 56 4e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 50 2e-07
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 49 6e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 48 2e-06
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 44 2e-05
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 31 0.16
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.5
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 2.0
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 26 4.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 4.5
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 6.0
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 225 bits (551), Expect = 4e-60
Identities = 112/188 (59%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
Frame = +1
Query: 136 RLP-RVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVI 312
RLP R+ + + + R YAKD++FG D RA +L GVD LA AV+VT+GPKGRNV+
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 313 LEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAI 492
++Q +GSPKITKDGVTVA+ V LKDKF+N+GA+LVQ+VA+ TNE AGDGTTTATVL RAI
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 493 AKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSKPVTTPEEIAQVATISANGDTAIG 672
E ++ G NP+++RRG+ LAVD V E L+ + +TT EEI+QVATISANGDT IG
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANGDTHIG 190
Query: 673 KLIADAMK 696
+L+A AM+
Sbjct: 191 ELLAKAME 198
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 62.9 bits (146), Expect = 4e-11
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Frame = +1
Query: 220 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 399
G D + +A+ V ++GP+G + IL G +T DG T+ +E++ +
Sbjct: 32 GIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQI-- 89
Query: 400 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVK 579
AKL+ ++ + ++E GDGTT VLA A+ ++ I KG +PI I G A
Sbjct: 90 --AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAV 147
Query: 580 EKLKGMSKPVTTPEEIAQVATISANGDTAIG-KLIADA 690
+ L +S V E + + T++G K+++ A
Sbjct: 148 KHLDAISDVVDFSPE--NTTNLFRSAKTSLGSKVVSKA 183
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 61.7 bits (143), Expect = 1e-10
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +1
Query: 220 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQ-SWGSPKITKDGVTVAKGVELKDKFQ 396
G + R G + D V T+GPKG + IL+ S G +T DG T+ K + L
Sbjct: 18 GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL----D 73
Query: 397 NIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAV 576
N AK++ N++ ++E GDGTT+ V A + ++ ++ +P I G +A
Sbjct: 74 NAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTA 133
Query: 577 KEKLKGMS 600
+ L+ S
Sbjct: 134 IDALRASS 141
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 60.9 bits (141), Expect = 2e-10
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Frame = +1
Query: 226 DVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIG 405
+VR + +ADA+ ++GPKG + +++ G +T DG T+ K + + +
Sbjct: 19 EVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV----LHPA 74
Query: 406 AKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEI----RRGVMLAVDA 573
AK++ +++ + EAGDGTT+ +LA ++ + + KG +P I +R VD
Sbjct: 75 AKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDC 134
Query: 574 VKEKLKGMSKPVTTPEEIAQVATISAN 654
+KE ++ ++ E + + AT S N
Sbjct: 135 MKE--NALAIELSDRESLLRAATTSLN 159
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 56.4 bits (130), Expect = 4e-09
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +1
Query: 220 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 399
G DVR + +A+ V ++GP G + +L G +T DG T+ + L D
Sbjct: 19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATI---LSLLDVEHP 75
Query: 400 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAV-DAV 576
G LV+ +A ++E GDGTT+ ++A + + E + +P I G LA+ +AV
Sbjct: 76 AGKVLVE-LAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 577 K 579
K
Sbjct: 135 K 135
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/108 (27%), Positives = 50/108 (46%)
Frame = +1
Query: 268 DAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEE 447
D + T+GP G + ++ G I+ DG T+ K +++ AK + ++A + E
Sbjct: 38 DTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHP----AAKTLVDIARAQDAE 93
Query: 448 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLK 591
GDGTT+ V A + +E + G + I RG A K+K
Sbjct: 94 VGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIK 141
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 49.2 bits (112), Expect = 6e-07
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Frame = +1
Query: 244 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 423
+Q +AD + +GP+ +L GS +T DG + + +E+ AK +
Sbjct: 25 IQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHP----AAKSMIE 80
Query: 424 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSK 603
+A +EE GDGTT+ +LA I + + +P+ + R A++ + ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 604 PVTTPEEIAQVATISANGDTAIG-KLIA 684
PV + I T IG KL+A
Sbjct: 141 PVNVDDNAEMFRLIR----TCIGTKLVA 164
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/101 (29%), Positives = 48/101 (47%)
Frame = +1
Query: 262 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 441
L D + +GP G +L G+ K+TKDG + +++ QN A + A +
Sbjct: 28 LQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQI----QNPTASCIAKAATAQD 83
Query: 442 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 564
+ GDGTT+ +L + K+ I +G +P I G LA
Sbjct: 84 DATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLA 124
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/110 (24%), Positives = 46/110 (41%)
Frame = +1
Query: 262 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 441
L++ ++GP G+N I+ +T D T+ + +E+ AKLV +
Sbjct: 38 LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHP----AAKLVVDATQQQE 93
Query: 442 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLK 591
E GD V + + I G P+EI +G +A+ E L+
Sbjct: 94 NELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLE 143
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 31.1 bits (67), Expect = 0.16
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 301 RNVILEQSWGSPKITKDGVTVAK-GVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATV 477
R VI ++ S +T G T G+ELKD+F+ +G K++ T + T +
Sbjct: 542 RKVIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVKVL-----GTPIDTIITTEDREL 596
Query: 478 LARAIAKEGFEKISKGANPIEIRRGVMLAVD 570
ARA+ E EK +K A+ I + ++ D
Sbjct: 597 FARAM-DEINEKCAKSASASSIEEAIKVSKD 626
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 321 LFQNNVSTFWTHCNGYGIS*DVNALQHESSYISAKPHIFGI 199
++ N +S T +G+GI +++ + E SAK H+FGI
Sbjct: 225 IYPNTLSVLRTRASGFGIKIELDNITPELITKSAK-HVFGI 264
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 139 LPRVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAV 276
+P V++ + ++ Y+L+ F+ R+ V LQGV + AD V
Sbjct: 140 VPSVLKAPIFIY--YRLTNFFQNHRRYAKSVDEKQLQGVALTADEV 183
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 656 PLADMVATCAISSGVVTGFDIPLSFSLTASTASITPLLISIGLAPF 519
PL D T + S ++TG L+ + T S+TP L++ LA +
Sbjct: 332 PLFDAFKTVSDSLQILTGVVSTLTINPTKIAESLTPDLLATDLAEY 377
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 223 RQTSHLWHKILKVDMIYGEKQFDEQHEVDATFLKIVLILAVF 98
RQT+ +W + V F H +ATF ++L + F
Sbjct: 166 RQTNIVWMVFIAVTYFASNMSFFNPHLAEATFADVLLTIISF 207
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -1
Query: 416 TNLAPMFWNLSLSSTPLATVTPSFVIFGD--PQDCSR-----ITF-LPFGPIVTATASAR 261
T L P F NL SS+ T F+ D ++ SR I F + + P+V+
Sbjct: 129 TLLPPTFHNLIPSSSSYETAVAEFLHMEDLLQENVSRELECQICFGMLYDPVVSPCGHT- 187
Query: 260 MSTPCSMRALTSAP 219
PC M+ALT +P
Sbjct: 188 FCGPCLMQALTQSP 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,863
Number of Sequences: 5004
Number of extensions: 48901
Number of successful extensions: 167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -